Partitiviridae isolate Culex/Masinga5M2/2023/partiti-like_virus-2:segment:1 RNA dependent RNA polymerase (RdRp) gene, partial cds.

---

Seq-submit ::= {
  sub {
    contact {
      contact {
        name name {
          last "Xia",
          first "Han",
          middle "",
          initials "",
          suffix "",
          title ""
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          country "China",
          street "NO.44 Xiaohongshan",
          email "hanxia@wh.iov.cn",
          postal-code "430071"
        }
      }
    },
    cit {
      authors {
        names std {
          {
            name name {
              last "Xia",
              first "Han",
              initials "H."
            }
          }
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          sub "Hubei",
          country "China",
          street "NO.44 Xiaohongshan",
          postal-code "430071"
        }
      },
      date std {
        year 2025,
        month 7,
        day 15
      }
    },
    subtype new,
    tool "table2asn 1.28.1094"
  },
  data entrys {
    set {
      class nuc-prot,
      descr {
        source {
          org {
            taxname "Partitiviridae",
            orgname {
              mod {
                {
                  subtype isolate,
                  subname "Culex/Masinga5M2/2023/partiti-like_virus-2:segment:1"
                },
                {
                  subtype nat-host,
                  subname "Culex; Host_sex: UNKNOWN"
                },
                {
                  subtype metagenome-source,
                  subname "mosquito metagenome"
                }
              },
              gcode 1
            }
          },
          subtype {
            {
              subtype country,
              name "Kenya: Masinga"
            },
            {
              subtype environmental-sample,
              name ""
            },
            {
              subtype collection-date,
              name "2023"
            },
            {
              subtype metagenomic,
              name ""
            }
          }
        },
        user {
          type str "StructuredComment",
          data {
            {
              label str "StructuredCommentPrefix",
              data str "##Assembly-Data-START##"
            },
            {
              label str "Assembly Method",
              data str "Megahit v. 1.2.9"
            },
            {
              label str "Sequencing Technology",
              data str "Illumina"
            },
            {
              label str "StructuredCommentSuffix",
              data str "##Assembly-Data-END##"
            }
          }
        },
        create-date std {
          year 2025,
          month 7,
          day 15
        }
      },
      seq-set {
        seq {
          id {
genbank { accession "C_AA111838", version 1}, gi 0670650651118381
          },
          descr {

        user {
            class "1.0",
            type str "AutodefOptions",
            data {
                {label str "UseLabels", data bool TRUE},
                {label str "LeaveParenthetical", data bool TRUE},
                {label str "SpecifyNuclearProduct", data bool TRUE},
                {label str "MaxMods", data int 0},
                {label str "FeatureListType", data str "List All Features"},
                {label str "MiscFeatRule", data str "Delete"},
                {label str "HIVRule", data str "WantBoth"},
                {label str "ModifierList",
                    data fields { {label str "OrgMods", num 1,
                            data strs {"isolate" }}}}}},
        
            molinfo {
              biomol genomic
            },
            user {
              type str "Submission",
              data {
                {
                  label str "AdditionalComment",
                  data str "GenBase"
                }
              }
            }
          },
          inst {
            repr raw,
            mol rna,
            length 1385,
            topology linear,
            strand ss,
            seq-data ncbi4na '481881248811824882814144888844118424222111248122
224122282222181842121142828488844141411488282812842824814182441188414488814888
118211411841218488411418444182211822412118818824841841241188844181848148124842
142284441811488214848412822148411222118221228411241818288841818441888441218824
811482214222244128222484421422121481211112424244241148818441284822141842814412
182418224124281284421224218811442144141141228412122841841884211448488481824242
121818221414141841122411418224142148481844181822412842818212188418441442184888
842128222888418241241481211411144111412422488442881244181241218442448844844142
281211128224282824818211411481824181888244184818241888882214288241811412148182
442421488418111418142188882218128241121411248441218124124181221111421844818122
141242114814128481224142184441281228148411481888828441412822428224488484811244
241114484411411411442844848822114844182281888212221428848841882218248811884418
888418211281842188228211414188244114418422141141884228448288844241841882448148
482214211214221288282428441441418114844221128482441142844218412248411248841811
482218281212112284248241841148441488828444188814418141144844888822284824814228
241114484418441442FFF481221822141184422141241441884441218488242214824442228144
488488281242411242444148411844421488882221418184224811218848144148824842488812
418111828222824141212142824218488124411828244218114418812841884282122218828112
828222841440'H
          },
          annot {
            {
              data ftable {
                {
                  id local id 2,
                  data gene {
                    locus "RdRp"
                  },
                  partial TRUE,
                  location int {
                    from 0,
                    to 1384,
                    strand plus,
                    id gi 0670650651118381,
                    fuzz-from lim lt,
                    fuzz-to lim gt
                  },
                  xref {
                    {
                      id local id 1
                    }
                  }
                },
                {
                  id local id 3,
                  data rna {
                    type mRNA,
                    ext name "RNA dependent RNA polymerase"
                  },
                  partial TRUE,
                  location int {
                    from 0,
                    to 1384,
                    strand plus,
                    id gi 0670650651118381,
                    fuzz-from lim lt,
                    fuzz-to lim gt
                  },
                  xref {
                    {
                      data gene {
                        locus "RdRp"
                      }
                    },
                    {
                      id local id 1
                    }
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25549", version 1}, gi 067065065076255491
          },
          descr {
            title "MAG: RNA dependent RNA polymerase, partial [Partitiviridae]",
            molinfo {
              biomol peptide,
              tech concept-trans,
              completeness no-ends
            }
          },
          inst {
            repr raw,
            mol aa,
            length 461,
            seq-data iupacaa "YYVNRSRGFGMRPNVPRPSPYAQALFGEKFSTARRSELRFSLIKNDML
KMGSNPTIIRDDEFGYVVRAAWDKFSVTPVNPIHLNDIFDMDLDIRKSSPGLPWQPQYKTRGEVMDCPDARTSIRRYW
HRIKAGEDLTPDDCKVLYRAHIQRDEPKIRAVYGYPTAITLMEACFALPLIDEYKKGKTPLAYGYDMAVGGAYKLRSR
IKKYRYFGCIDFSSFDKTVSAQLIKIAFSILEQNVDIRRYQKHGIPDASRLYRAWDYLVKYFLETPLRLCNGERWKKK
AGVPSGSYFTQLVDSIVNWILINYAFLKRFGRMPEDCLVFGDDSVVSSNSHFSLEEISGQLSEAGMTVNVDKSIYTTC
VDEVEFLGFRIEGGFPCRSLERWMEAXYHPEWPDEDWDMFASRALGLFYANAGVNGQFSQICRNIVGVRAFTINLPRD
TARMLRNLGIRITDCSPILTLPE"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "RNA dependent RNA polymerase"
                    }
                  },
                  partial TRUE,
                  location int {
                    from 0,
                    to 460,
                    id gi 067065065076255491,
                    fuzz-from lim lt,
                    fuzz-to lim gt
                  }
                }
              }
            }
          }
        }
      },
      annot {
        {
          data ftable {
            {
              id local id 1,
              data cdregion {
                frame two,
                code {
                  id 1
                }
              },
              partial TRUE,
              product whole gi 067065065076255491,
              location int {
                from 0,
                to 1384,
                strand plus,
                id gi 0670650651118381,
                fuzz-from lim lt,
                fuzz-to lim gt
              },
              xref {
                {
                  id local id 2
                },
                {
                  id local id 3
                }
              }
            }
          }
        }
      }
    }
  }
}