高级检索

Riboviria isolate Culex/Museum63/2023/Kwale_virus:segment:2 Capsid protein (capsid) and Movement protein (Movement) genes, complete cds.

Accession:
C_AA111893.1

Seq-submit ::= {
  sub {
    contact {
      contact {
        name name {
          last "Xia",
          first "Han",
          middle "",
          initials "",
          suffix "",
          title ""
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          country "China",
          street "NO.44 Xiaohongshan",
          email "hanxia@wh.iov.cn",
          postal-code "430071"
        }
      }
    },
    cit {
      authors {
        names std {
          {
            name name {
              last "Xia",
              first "Han",
              initials "H."
            }
          }
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          sub "Hubei",
          country "China",
          street "NO.44 Xiaohongshan",
          postal-code "430071"
        }
      },
      date std {
        year 2025,
        month 7,
        day 15
      }
    },
    subtype new,
    tool "table2asn 1.28.1094"
  },
  data entrys {
    set {
      class nuc-prot,
      descr {
        source {
          org {
            taxname "Riboviria",
            orgname {
              mod {
                {
                  subtype isolate,
                  subname "Culex/Museum63/2023/Kwale_virus:segment:2"
                },
                {
                  subtype nat-host,
                  subname "Culex; Host_sex: Female"
                },
                {
                  subtype metagenome-source,
                  subname "mosquito metagenome"
                }
              },
              gcode 1
            }
          },
          subtype {
            {
              subtype country,
              name "Kenya: Museum"
            },
            {
              subtype environmental-sample,
              name ""
            },
            {
              subtype collection-date,
              name "2023"
            },
            {
              subtype metagenomic,
              name ""
            }
          }
        },
        user {
          type str "StructuredComment",
          data {
            {
              label str "StructuredCommentPrefix",
              data str "##Assembly-Data-START##"
            },
            {
              label str "Assembly Method",
              data str "Megahit v. 1.2.9"
            },
            {
              label str "Sequencing Technology",
              data str "Illumina"
            },
            {
              label str "StructuredCommentSuffix",
              data str "##Assembly-Data-END##"
            }
          }
        },
        create-date std {
          year 2025,
          month 7,
          day 15
        }
      },
      seq-set {
        seq {
          id {
genbank { accession "C_AA111893", version 1}, gi 0670650651118931
          },
          descr {

        user {
            class "1.0",
            type str "AutodefOptions",
            data {
                {label str "UseLabels", data bool TRUE},
                {label str "LeaveParenthetical", data bool TRUE},
                {label str "SpecifyNuclearProduct", data bool TRUE},
                {label str "MaxMods", data int 0},
                {label str "FeatureListType", data str "List All Features"},
                {label str "MiscFeatRule", data str "Delete"},
                {label str "HIVRule", data str "WantBoth"},
                {label str "ModifierList",
                    data fields { {label str "OrgMods", num 1,
                            data strs {"isolate" }}}}}},
        
            molinfo {
              biomol genomic
            },
            user {
              type str "Submission",
              data {
                {
                  label str "AdditionalComment",
                  data str "GenBase"
                }
              }
            }
          },
          inst {
            repr raw,
            mol rna,
            length 1556,
            topology linear,
            strand ss,
            seq-data ncbi4na '418881812882288448814222881818112841428811884288
818888112121184148111214884114111214288421828881128428211481428424184114488422
11122421122811242882842211411124424211814424211811411124144144142242F442224148
441488828428418441248188182482211141428411282281882414188111482442114418114822
822124828818818411422884214224122824122241184124844284114128284148448148882828
214181188844218822424141281414818242222428484444424184111418442828281482482441
482412844412221184124122484228148114142114482211148848128228112888214482221481
844214114114414884128282221424828244881214148241114818818428282824418824444418
181228184181412111422228848414488884428812881424848822822118114411414414214812
8884444121828441822128181144811222842144442281118144414124141242222222212F1228
228441228148484888418812212184F88144414481122281818411484241442182181141121114
818414218211218214214122821444818818114222888414182414184424118144418184181124
81842142142442241448288148211244112241888412218841441F118812142488828212418418
824111484418112484148411181211848488824144222224124844118888411228481441881481
21828144888482888411114822181288822411418112418488841888812848F218882484824118
14411818888848822811442828811141148111848842818882441111242F114182111181188448
228481184118288882118148211428228244142418118844882184181111888848214884181414
18288141222812142448418121F48211218848218211821F122818181418818144844418448418
18448488441818812422418F188124888818118822484121828884884212882444414444414448
41414882242442411814814241482428F41114841241441F822221822824148888821148442414
88821148848441221281881488'H
          },
          annot {
            {
              data ftable {
                {
                  id local id 2,
                  data gene {
                    locus "capsid"
                  },
                  location int {
                    from 60,
                    to 722,
                    strand plus,
                    id gi 0670650651118931
                  },
                  xref {
                    {
                      id local id 1
                    }
                  }
                },
                {
                  id local id 3,
                  data rna {
                    type mRNA,
                    ext name "Capsid protein"
                  },
                  location int {
                    from 60,
                    to 722,
                    strand plus,
                    id gi 0670650651118931
                  },
                  xref {
                    {
                      data gene {
                        locus "capsid"
                      }
                    },
                    {
                      id local id 1
                    }
                  }
                },
                {
                  id local id 5,
                  data gene {
                    locus "Movement"
                  },
                  location int {
                    from 777,
                    to 1553,
                    strand plus,
                    id gi 0670650651118931
                  },
                  xref {
                    {
                      id local id 4
                    }
                  }
                },
                {
                  id local id 6,
                  data rna {
                    type mRNA,
                    ext name "Movement protein"
                  },
                  location int {
                    from 777,
                    to 1553,
                    strand plus,
                    id gi 0670650651118931
                  },
                  xref {
                    {
                      data gene {
                        locus "Movement"
                      }
                    },
                    {
                      id local id 4
                    }
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25643", version 1}, gi 067065065076256431
          },
          descr {
            title "MAG: Capsid protein [Riboviria]",
            molinfo {
              biomol peptide,
              tech concept-trans
            }
          },
          inst {
            repr raw,
            mol aa,
            length 220,
            seq-data iupacaa "MSKQLKKQLASLTAQVAAMKVAKPQPNASAKKRRNRRNKKRGGAAGPS
GVSADGRIIVQRAELLFEIKVGKDKSSTSYYEALQPTSTRMTWLKTLSGSFSQIIWHSARLEYRPAVGAMKDGSLVVG
VDWDPMTTVPSKSKVQSCTPNFQVPVWQKKELTLPASRLQSRKYYALSDSGDIPMIDKAPCEVLAYLACSSNKEEEQY
FGDIWIHYKVTLQGPK"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "Capsid protein"
                    }
                  },
                  location int {
                    from 0,
                    to 219,
                    id gi 067065065076256431
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25644", version 1}, gi 067065065076256441
          },
          descr {
            title "MAG: Movement protein [Riboviria]",
            molinfo {
              biomol peptide,
              tech concept-trans
            }
          },
          inst {
            repr raw,
            mol aa,
            length 258,
            seq-data iupacaa "MXREVTLYEVRGIIRTKYEHQHQQTSGYYKPFEIEMANRDMITYAAAA
EVLVNGTDLTIEXNYSVSHDDSKVDNVSEIQCVSRPPTWNFEPVGLVHLGLSLKSPYFPKITMFDFTVHFVSNRNIFV
PKALKEVNVAISENAKIKIIGPVMNLFNSQAPRSDNWFMIKFCQLIEILDPTAVIXVNIVINXTYIDYRWDGDMVLDI
TPXITFYNSVTSLLHFGEGEGESSAANSSESLESDEXSPSSSFSSGEFQVVDHY"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "Movement protein"
                    }
                  },
                  location int {
                    from 0,
                    to 257,
                    id gi 067065065076256441
                  }
                }
              }
            }
          }
        }
      },
      annot {
        {
          data ftable {
            {
              id local id 1,
              data cdregion {
                frame one,
                code {
                  id 1
                }
              },
              product whole gi 067065065076256431,
              location int {
                from 60,
                to 722,
                strand plus,
                id gi 0670650651118931
              },
              xref {
                {
                  id local id 2
                },
                {
                  id local id 3
                }
              }
            },
            {
              id local id 4,
              data cdregion {
                frame one,
                code {
                  id 1
                }
              },
              product whole gi 067065065076256441,
              location int {
                from 777,
                to 1553,
                strand plus,
                id gi 0670650651118931
              },
              xref {
                {
                  id local id 5
                },
                {
                  id local id 6
                }
              }
            }
          }
        }
      }
    }
  }
}
资助信息
资助标题:Research on Discovery of Arthropod-borne Viral Pathogens and Infection Transmission Risk
资助机构:Ministry of Science and Technology of the People's Republic of China (MOST)
资助项目:National Key Technologies R&D Program
资助标号:2023QNTJ-03
资助标题:Cross-border Vector-borne Disease Pathogen Surveillance and Port Application
资助机构:Ministry of Science and Technology of the People's Republic of China (MOST)
资助项目:National Key Technologies R&D Program
资助标号:2022YFC2302700
序列分析