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Partitiviridae isolate Aedes/MsambweniAMF1/2019/partiti-like_virus-2:segment:2 hypothetical protein no blastphit (ORF1) and ORF (ORF12) genes, complete cds.

Accession:
C_AA111907.1

Seq-submit ::= {
  sub {
    contact {
      contact {
        name name {
          last "Xia",
          first "Han",
          middle "",
          initials "",
          suffix "",
          title ""
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          country "China",
          street "NO.44 Xiaohongshan",
          email "hanxia@wh.iov.cn",
          postal-code "430071"
        }
      }
    },
    cit {
      authors {
        names std {
          {
            name name {
              last "Xia",
              first "Han",
              initials "H."
            }
          }
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          sub "Hubei",
          country "China",
          street "NO.44 Xiaohongshan",
          postal-code "430071"
        }
      },
      date std {
        year 2025,
        month 7,
        day 15
      }
    },
    subtype new,
    tool "table2asn 1.28.1094"
  },
  data entrys {
    set {
      class nuc-prot,
      descr {
        source {
          org {
            taxname "Partitiviridae",
            orgname {
              mod {
                {
                  subtype isolate,
                  subname "Aedes/MsambweniAMF1/2019/partiti-like_virus-2:segme
nt:2"
                },
                {
                  subtype nat-host,
                  subname "Aedes; Host_sex: Female"
                },
                {
                  subtype metagenome-source,
                  subname "mosquito metagenome"
                }
              },
              gcode 1
            }
          },
          subtype {
            {
              subtype country,
              name "Kenya: Msambweni"
            },
            {
              subtype environmental-sample,
              name ""
            },
            {
              subtype collection-date,
              name "2019"
            },
            {
              subtype metagenomic,
              name ""
            }
          }
        },
        user {
          type str "StructuredComment",
          data {
            {
              label str "StructuredCommentPrefix",
              data str "##Assembly-Data-START##"
            },
            {
              label str "Assembly Method",
              data str "Megahit v. 1.2.9"
            },
            {
              label str "Sequencing Technology",
              data str "Illumina"
            },
            {
              label str "StructuredCommentSuffix",
              data str "##Assembly-Data-END##"
            }
          }
        },
        create-date std {
          year 2025,
          month 7,
          day 15
        }
      },
      seq-set {
        seq {
          id {
genbank { accession "C_AA111907", version 1}, gi 0670650651119071
          },
          descr {

        user {
            class "1.0",
            type str "AutodefOptions",
            data {
                {label str "UseLabels", data bool TRUE},
                {label str "LeaveParenthetical", data bool TRUE},
                {label str "SpecifyNuclearProduct", data bool TRUE},
                {label str "MaxMods", data int 0},
                {label str "FeatureListType", data str "List All Features"},
                {label str "MiscFeatRule", data str "Delete"},
                {label str "HIVRule", data str "WantBoth"},
                {label str "ModifierList",
                    data fields { {label str "OrgMods", num 1,
                            data strs {"isolate" }}}}}},
        
            molinfo {
              biomol genomic
            },
            user {
              type str "Submission",
              data {
                {
                  label str "AdditionalComment",
                  data str "GenBase"
                }
              }
            }
          },
          inst {
            repr raw,
            mol rna,
            length 1409,
            topology linear,
            strand ss,
            seq-data ncbi4na '144882111448218842288284814441121481118822218124
848141111481812221828812812128148284241881821118824448111821112818882428114141
8888111F2884188281411821188228441414442228112444811181288114828811288282841888
148884224121282444481482214422884111281122188821142248884111248142441428128882
1144821882441182F1884118481218211884812212224241112128421242811421188118884241
11288284121882121884182148228248888448841881881824222824818848811F814482818148
821828281821421848224411122421418882442221141118222128228224224881212442114112
841424411841141841114842284141182212284114841228122112218441122144281281884884
1211888811211811148848184812448221214228112814421418884441821188441222811F2182
184448881112218484124144121181241141484118822481812841821111882141221822484248
444218814244441141841814282888284884114188822884882281121144181144224224844182
14F8484844418148241212444811F4281182181F822142828844881814188122218142221F2111
184284812122424188211144184148884488812112182888882111882118424184482214281818
428121814421818818442418884124412248211112812241218881181418424824142111844841
414121881418881281481281121211181411144812128218814184112412841141114841184112
1488141841828118841211121122882818118814841128F8221184141822211884414224214284
811228884214281144181FF18148141828188882841128811442228214112112828282F2284288
281488884128884824224188224118112881818181F82481428211411122181822211288248111
488821141484188181818841221842121120'H
          },
          annot {
            {
              data ftable {
                {
                  id local id 2,
                  data gene {
                    locus "ORF1"
                  },
                  location int {
                    from 304,
                    to 543,
                    strand plus,
                    id gi 0670650651119071
                  },
                  xref {
                    {
                      id local id 1
                    }
                  }
                },
                {
                  id local id 3,
                  data rna {
                    type mRNA,
                    ext name "hypothetical protein no blastphit"
                  },
                  location int {
                    from 304,
                    to 543,
                    strand plus,
                    id gi 0670650651119071
                  },
                  xref {
                    {
                      data gene {
                        locus "ORF1"
                      }
                    },
                    {
                      id local id 1
                    }
                  }
                },
                {
                  id local id 5,
                  data gene {
                    locus "ORF12"
                  },
                  location int {
                    from 452,
                    to 1327,
                    strand plus,
                    id gi 0670650651119071
                  },
                  xref {
                    {
                      id local id 4
                    }
                  }
                },
                {
                  id local id 6,
                  data rna {
                    type mRNA,
                    ext name "ORF"
                  },
                  location int {
                    from 452,
                    to 1327,
                    strand plus,
                    id gi 0670650651119071
                  },
                  xref {
                    {
                      data gene {
                        locus "ORF12"
                      }
                    },
                    {
                      id local id 4
                    }
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25670", version 1}, gi 067065065076256701
          },
          descr {
            title "MAG: hypothetical protein no blastphit [Partitiviridae]",
            molinfo {
              biomol peptide,
              tech concept-trans
            }
          },
          inst {
            repr raw,
            mol aa,
            length 79,
            seq-data iupacaa "MYINCTTRETLHAKQLICETSDIHIDQSSFWLIIIALVLLXRSIVHLY
QHVRKPQISAQEIPLLRRYTARTERNEDESA"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "hypothetical protein no blastphit"
                    }
                  },
                  location int {
                    from 0,
                    to 78,
                    id gi 067065065076256701
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25671", version 1}, gi 067065065076256711
          },
          descr {
            title "MAG: ORF [Partitiviridae]",
            molinfo {
              biomol peptide,
              tech concept-trans
            }
          },
          inst {
            repr raw,
            mol aa,
            length 291,
            seq-data iupacaa "MSGNRRFRPKKSHSSAVTRQELSGMKMKVPENPPEVTYQPWNQATIVD
NFNNKVVCTVHSLTRQIWDQLDPXHHGFKPCDEDNTKSEFRILIKIQTIRAWALAGKMIALSVEDFLVPNKDKAAVDQ
XCGIVDTGXANHXPALGYRLPIAXQNAVHRDSKDEFGLQHLFQIQCDGPAICYIGILWRFDGPSKLPTFNRCVEQMVR
DIRFTSTNTNRKVHSLDERLKKVNEQLDDLIDKQPSIISELSNEIPIGAAAVTFAAKDXIVDLFSELKALRTTLSPAS
SFDFVADSE"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "ORF"
                    }
                  },
                  location int {
                    from 0,
                    to 290,
                    id gi 067065065076256711
                  }
                }
              }
            }
          }
        }
      },
      annot {
        {
          data ftable {
            {
              id local id 1,
              data cdregion {
                frame one,
                code {
                  id 1
                }
              },
              product whole gi 067065065076256701,
              location int {
                from 304,
                to 543,
                strand plus,
                id gi 0670650651119071
              },
              xref {
                {
                  id local id 2
                },
                {
                  id local id 3
                }
              }
            },
            {
              id local id 4,
              data cdregion {
                frame one,
                code {
                  id 1
                }
              },
              product whole gi 067065065076256711,
              location int {
                from 452,
                to 1327,
                strand plus,
                id gi 0670650651119071
              },
              xref {
                {
                  id local id 5
                },
                {
                  id local id 6
                }
              }
            }
          }
        }
      }
    }
  }
}
资助信息
资助标题:Research on Discovery of Arthropod-borne Viral Pathogens and Infection Transmission Risk
资助机构:Ministry of Science and Technology of the People's Republic of China (MOST)
资助项目:National Key Technologies R&D Program
资助标号:2023QNTJ-03
资助标题:Cross-border Vector-borne Disease Pathogen Surveillance and Port Application
资助机构:Ministry of Science and Technology of the People's Republic of China (MOST)
资助项目:National Key Technologies R&D Program
资助标号:2022YFC2302700
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