Partitiviridae isolate Aedes/MsambweniAMF2/2019/partiti-like_virus-2:segment:1 RNA dependent RNA polymerase (RdRp) gene, partial cds.

---

Seq-submit ::= {
  sub {
    contact {
      contact {
        name name {
          last "Xia",
          first "Han",
          middle "",
          initials "",
          suffix "",
          title ""
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          country "China",
          street "NO.44 Xiaohongshan",
          email "hanxia@wh.iov.cn",
          postal-code "430071"
        }
      }
    },
    cit {
      authors {
        names std {
          {
            name name {
              last "Xia",
              first "Han",
              initials "H."
            }
          }
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          sub "Hubei",
          country "China",
          street "NO.44 Xiaohongshan",
          postal-code "430071"
        }
      },
      date std {
        year 2025,
        month 7,
        day 15
      }
    },
    subtype new,
    tool "table2asn 1.28.1094"
  },
  data entrys {
    set {
      class nuc-prot,
      descr {
        source {
          org {
            taxname "Partitiviridae",
            orgname {
              mod {
                {
                  subtype isolate,
                  subname "Aedes/MsambweniAMF2/2019/partiti-like_virus-2:segme
nt:1"
                },
                {
                  subtype nat-host,
                  subname "Aedes; Host_sex: Female"
                },
                {
                  subtype metagenome-source,
                  subname "mosquito metagenome"
                }
              },
              gcode 1
            }
          },
          subtype {
            {
              subtype country,
              name "Kenya: Msambweni"
            },
            {
              subtype environmental-sample,
              name ""
            },
            {
              subtype collection-date,
              name "2019"
            },
            {
              subtype metagenomic,
              name ""
            }
          }
        },
        user {
          type str "StructuredComment",
          data {
            {
              label str "StructuredCommentPrefix",
              data str "##Assembly-Data-START##"
            },
            {
              label str "Assembly Method",
              data str "Megahit v. 1.2.9"
            },
            {
              label str "Sequencing Technology",
              data str "Illumina"
            },
            {
              label str "StructuredCommentSuffix",
              data str "##Assembly-Data-END##"
            }
          }
        },
        create-date std {
          year 2025,
          month 7,
          day 15
        }
      },
      seq-set {
        seq {
          id {
genbank { accession "C_AA111909", version 1}, gi 0670650651119091
          },
          descr {

        user {
            class "1.0",
            type str "AutodefOptions",
            data {
                {label str "UseLabels", data bool TRUE},
                {label str "LeaveParenthetical", data bool TRUE},
                {label str "SpecifyNuclearProduct", data bool TRUE},
                {label str "MaxMods", data int 0},
                {label str "FeatureListType", data str "List All Features"},
                {label str "MiscFeatRule", data str "Delete"},
                {label str "HIVRule", data str "WantBoth"},
                {label str "ModifierList",
                    data fields { {label str "OrgMods", num 1,
                            data strs {"isolate" }}}}}},
        
            molinfo {
              biomol genomic
            },
            user {
              type str "Submission",
              data {
                {
                  label str "AdditionalComment",
                  data str "GenBase"
                }
              }
            }
          },
          inst {
            repr raw,
            mol rna,
            length 1605,
            topology linear,
            strand ss,
            seq-data ncbi4na '422422112248188811184148812414428114818184111122
288222824144414441812221488412281141114422448122418244188422411422882121144111
212888448412111481481418418484121441114888212144424122881121821428414184112412
41288818411488841824824821248822118418111121141222848481288F822182282214121282
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421214182848111121418428112111182248421484888448812221281128488888148414414484
248844484818221282184248818284114124848121112418882228181424812442281411184424
11844844118421481F182118411184848118248821222228441821122812484182112418818242
184888418114122488221222844282181241418421882828188881421412848882418184448248
482411142821418448881181844411488418424414114142884281242888111242184184242812
882181118128228488141884118148448414141882184111214442448188222821448828448844
12811218248244214218128111242418218812F141818428488812112121128441822281222882
42841218881218444241841282288248848F488411441228488112282411418881421121481488
41141111888244448418188411812141811414884448412212182F828488112488212888282444
818812118288412448482424888111228211418128188188424822882181812228411141114224
41241248821412812884842824844828444121488484482F824884441148141148428211114844
884411881482211418188184411121212142188824822214844188411412818282212141812221
118241882141888884114122881442881118228482414881444282224414228148884184444488
4881221884814112228222211824242881442148821148241448121411188841118182848180'H
          },
          annot {
            {
              data ftable {
                {
                  id local id 2,
                  data gene {
                    locus "RdRp"
                  },
                  partial TRUE,
                  location int {
                    from 18,
                    to 1604,
                    strand plus,
                    id gi 0670650651119091,
                    fuzz-to lim gt
                  },
                  xref {
                    {
                      id local id 1
                    }
                  }
                },
                {
                  id local id 3,
                  data rna {
                    type mRNA,
                    ext name "RNA dependent RNA polymerase"
                  },
                  partial TRUE,
                  location int {
                    from 18,
                    to 1604,
                    strand plus,
                    id gi 0670650651119091,
                    fuzz-to lim gt
                  },
                  xref {
                    {
                      data gene {
                        locus "RdRp"
                      }
                    },
                    {
                      id local id 1
                    }
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25674", version 1}, gi 067065065076256741
          },
          descr {
            title "MAG: RNA dependent RNA polymerase, partial [Partitiviridae]",
            molinfo {
              biomol peptide,
              tech concept-trans,
              completeness no-right
            }
          },
          inst {
            repr raw,
            mol aa,
            length 529,
            seq-data iupacaa "MSYEAKYMKTLPSREGYPVDLRKAGTDRIAEAFTRKHFGDKVVDDVTG
KFHRATLTSAEMNDDFMKFDRRHVPMIKQDPVYXSILQTLREELVPEKKIIPFTTGGAWAAPEFPKDKSPGLPYRELG
YKTKGEVLDHKSNRNEIMATWYAVGAGNVHXLPDTMIFYRAQICKTDANKIRAVFGYPLTVFSEEVRWVYPLMRYLKT
CTNDFPIAYGLEMANGGMQXINEMCNRSPPGSTYVINDYRMFDKTVPPWLIRDAFSILADCFDMGRVESSDGLIWEVD
AEKSLLRFKRMMRYFINTPVRLNSGERFMKQGGIPSGSGWTNIVGSILNAIITRYAVYNTTGSLPFADIYMGDDSFVV
VEGPVNLEDLATVVEENFGVILNTDKSWVTTSSVNVHFLGYYNLDGVAFKPQDTIIASFIYPERKPDDVQTTCARGLG
QLWSSLGSRSAQKWLELVQDIMETHSISSQWIEDYLHRYPNRFRFLKTLGLNPVELGLPEPSLMGVVTIVEPSPIALR
QFKSRYRNLKYLY"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "RNA dependent RNA polymerase"
                    }
                  },
                  partial TRUE,
                  location int {
                    from 0,
                    to 528,
                    id gi 067065065076256741,
                    fuzz-to lim gt
                  }
                }
              }
            }
          }
        }
      },
      annot {
        {
          data ftable {
            {
              id local id 1,
              data cdregion {
                frame one,
                code {
                  id 1
                }
              },
              partial TRUE,
              product whole gi 067065065076256741,
              location int {
                from 18,
                to 1604,
                strand plus,
                id gi 0670650651119091,
                fuzz-to lim gt
              },
              xref {
                {
                  id local id 2
                },
                {
                  id local id 3
                }
              }
            }
          }
        }
      }
    }
  }
}