Partitiviridae isolate Aedes/MsambweniAMF2/2019/partiti-like_virus-2:segment:2 Putative capsid protein (capsid) gene, partial cds.

---

Seq-submit ::= {
  sub {
    contact {
      contact {
        name name {
          last "Xia",
          first "Han",
          middle "",
          initials "",
          suffix "",
          title ""
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          country "China",
          street "NO.44 Xiaohongshan",
          email "hanxia@wh.iov.cn",
          postal-code "430071"
        }
      }
    },
    cit {
      authors {
        names std {
          {
            name name {
              last "Xia",
              first "Han",
              initials "H."
            }
          }
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          sub "Hubei",
          country "China",
          street "NO.44 Xiaohongshan",
          postal-code "430071"
        }
      },
      date std {
        year 2025,
        month 7,
        day 15
      }
    },
    subtype new,
    tool "table2asn 1.28.1094"
  },
  data entrys {
    set {
      class nuc-prot,
      descr {
        source {
          org {
            taxname "Partitiviridae",
            orgname {
              mod {
                {
                  subtype isolate,
                  subname "Aedes/MsambweniAMF2/2019/partiti-like_virus-2:segme
nt:2"
                },
                {
                  subtype nat-host,
                  subname "Aedes; Host_sex: Female"
                },
                {
                  subtype metagenome-source,
                  subname "mosquito metagenome"
                }
              },
              gcode 1
            }
          },
          subtype {
            {
              subtype country,
              name "Kenya: Msambweni"
            },
            {
              subtype environmental-sample,
              name ""
            },
            {
              subtype collection-date,
              name "2019"
            },
            {
              subtype metagenomic,
              name ""
            }
          }
        },
        user {
          type str "StructuredComment",
          data {
            {
              label str "StructuredCommentPrefix",
              data str "##Assembly-Data-START##"
            },
            {
              label str "Assembly Method",
              data str "Megahit v. 1.2.9"
            },
            {
              label str "Sequencing Technology",
              data str "Illumina"
            },
            {
              label str "StructuredCommentSuffix",
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            }
          }
        },
        create-date std {
          year 2025,
          month 7,
          day 15
        }
      },
      seq-set {
        seq {
          id {
genbank { accession "C_AA111910", version 1}, gi 0670650651119101
          },
          descr {

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                {label str "FeatureListType", data str "List All Features"},
                {label str "MiscFeatRule", data str "Delete"},
                {label str "HIVRule", data str "WantBoth"},
                {label str "ModifierList",
                    data fields { {label str "OrgMods", num 1,
                            data strs {"isolate" }}}}}},
        
            molinfo {
              biomol genomic
            },
            user {
              type str "Submission",
              data {
                {
                  label str "AdditionalComment",
                  data str "GenBase"
                }
              }
            }
          },
          inst {
            repr raw,
            mol rna,
            length 1485,
            topology linear,
            strand ss,
            seq-data ncbi4na '284481148242228888188488118184411112824188412118
111428422428822424421888821414221241221111114114882122882111224241114441222182
821241418411222828242214424418221242182248248111221411484418444414224418888828
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112184222121441188842188228114424182422484812288828424182441228482141418221112
824141111844218481142482228411188412412428428482118448481421441888882441428182
128418421124212218188818448142124221821221441481428424818828481282812411428421
118221222441488414184844241288224481441181121224422421412281218428282211228124
241428881282444812484221141122482224181128211414182141118182818122411288441182
411424488812418448412188211418884118418188421888444244112888112444188222882848
18241128128F141212484824124111482421444828111184228824182182441222188414148411
482448822211824211188441812484482428112418412214184222241112821248224124211441
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482148411818488441112181118821248248814184428882841414282222841144111121114481
1122242114411114248112222222121810'H
          },
          annot {
            {
              data ftable {
                {
                  id local id 2,
                  data gene {
                    locus "capsid"
                  },
                  partial TRUE,
                  location int {
                    from 0,
                    to 1412,
                    strand plus,
                    id gi 0670650651119101,
                    fuzz-from lim lt
                  },
                  xref {
                    {
                      id local id 1
                    }
                  }
                },
                {
                  id local id 3,
                  data rna {
                    type mRNA,
                    ext name "Putative capsid protein"
                  },
                  partial TRUE,
                  location int {
                    from 0,
                    to 1412,
                    strand plus,
                    id gi 0670650651119101,
                    fuzz-from lim lt
                  },
                  xref {
                    {
                      data gene {
                        locus "capsid"
                      }
                    },
                    {
                      id local id 1
                    }
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25675", version 1}, gi 067065065076256751
          },
          descr {
            title "MAG: Putative capsid protein, partial [Partitiviridae]",
            molinfo {
              biomol peptide,
              tech concept-trans,
              completeness no-left
            }
          },
          inst {
            repr raw,
            mol aa,
            length 470,
            seq-data iupacaa "LVSRPFIVNMENSIDNKAAASAAFSEPRPKKKFTFKPRKGPISRDEPS
RQADPRIRRKPEVDGEPDFSPKNLSTSFTTPKNDPCDIDAFSVADLSALGFLKRVPELRLNYSGYFDLIESIYRDMMS
QDRYWIRGVTEAMWTYYCTMLLWERLYFVRAHQNEIPLTAYIDFKSNMPTGICIPKAIAVYLSAIGPVRDPNSRKWHV
SVPEIDDAAVNGVAGFFGAITDATHHIYGSTPSPGVAAYSVLYEAANPPGVEMWRLPVGITPAADLHALQPTRALLGY
VPRTVPITQEIRNIYTELGIEAVYDGDIQDLNDIAFGRNFNGIPFCIELLRHVSTKVAGSKMPSIIGPIESEVGSQSQ
IGYVVANDDQMPRNSRPTQGIVSTRSYTQLVALRATAVAIFKPRVEYANIPRNYIYRFERDVVPPAWVATLNTQFNYG
RPEWINLDTFGLSEVDGRAVVSEYVGNINSRR"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "Putative capsid protein"
                    }
                  },
                  partial TRUE,
                  location int {
                    from 0,
                    to 469,
                    id gi 067065065076256751,
                    fuzz-from lim lt
                  }
                }
              }
            }
          }
        }
      },
      annot {
        {
          data ftable {
            {
              id local id 1,
              data cdregion {
                frame one,
                code {
                  id 1
                }
              },
              partial TRUE,
              product whole gi 067065065076256751,
              location int {
                from 0,
                to 1412,
                strand plus,
                id gi 0670650651119101,
                fuzz-from lim lt
              },
              xref {
                {
                  id local id 2
                },
                {
                  id local id 3
                }
              }
            }
          }
        }
      }
    }
  }
}