Partitiviridae isolate Aedes/MsambweniAMF3/2019/partiti-like_virus-2:segment:1 RNA dependent RNA polymerase (RdRp) gene, partial cds.

---

Seq-submit ::= {
  sub {
    contact {
      contact {
        name name {
          last "Xia",
          first "Han",
          middle "",
          initials "",
          suffix "",
          title ""
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          country "China",
          street "NO.44 Xiaohongshan",
          email "hanxia@wh.iov.cn",
          postal-code "430071"
        }
      }
    },
    cit {
      authors {
        names std {
          {
            name name {
              last "Xia",
              first "Han",
              initials "H."
            }
          }
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          sub "Hubei",
          country "China",
          street "NO.44 Xiaohongshan",
          postal-code "430071"
        }
      },
      date std {
        year 2025,
        month 7,
        day 15
      }
    },
    subtype new,
    tool "table2asn 1.28.1094"
  },
  data entrys {
    set {
      class nuc-prot,
      descr {
        source {
          org {
            taxname "Partitiviridae",
            orgname {
              mod {
                {
                  subtype isolate,
                  subname "Aedes/MsambweniAMF3/2019/partiti-like_virus-2:segme
nt:1"
                },
                {
                  subtype nat-host,
                  subname "Aedes; Host_sex: Female"
                },
                {
                  subtype metagenome-source,
                  subname "mosquito metagenome"
                }
              },
              gcode 1
            }
          },
          subtype {
            {
              subtype country,
              name "Kenya: Msambweni"
            },
            {
              subtype environmental-sample,
              name ""
            },
            {
              subtype collection-date,
              name "2019"
            },
            {
              subtype metagenomic,
              name ""
            }
          }
        },
        user {
          type str "StructuredComment",
          data {
            {
              label str "StructuredCommentPrefix",
              data str "##Assembly-Data-START##"
            },
            {
              label str "Assembly Method",
              data str "Megahit v. 1.2.9"
            },
            {
              label str "Sequencing Technology",
              data str "Illumina"
            },
            {
              label str "StructuredCommentSuffix",
              data str "##Assembly-Data-END##"
            }
          }
        },
        create-date std {
          year 2025,
          month 7,
          day 15
        }
      },
      seq-set {
        seq {
          id {
genbank { accession "C_AA111914", version 1}, gi 0670650651119141
          },
          descr {

        user {
            class "1.0",
            type str "AutodefOptions",
            data {
                {label str "UseLabels", data bool TRUE},
                {label str "LeaveParenthetical", data bool TRUE},
                {label str "SpecifyNuclearProduct", data bool TRUE},
                {label str "MaxMods", data int 0},
                {label str "FeatureListType", data str "List All Features"},
                {label str "MiscFeatRule", data str "Delete"},
                {label str "HIVRule", data str "WantBoth"},
                {label str "ModifierList",
                    data fields { {label str "OrgMods", num 1,
                            data strs {"isolate" }}}}}},
        
            molinfo {
              biomol genomic
            },
            user {
              type str "Submission",
              data {
                {
                  label str "AdditionalComment",
                  data str "GenBase"
                }
              }
            }
          },
          inst {
            repr raw,
            mol rna,
            length 1402,
            topology linear,
            strand ss,
            seq-data ncbi4na '184111122288222824144414441812221488412281141114
422448122418244188422411422882121144111212888448412111481481418418484121441114
88821214442412288112182142841418411241241288F184114888418248248212488221184181
111211412228484812888822182282214121282248411414881481228414114114181182222882
12212F448441424844421424221411882221114412111148228448881228818248411281441812
114121111444411482288412218114148118241112411182184422124844812421481441421448
112481212218881221412124184188882812241421214182848111121418428112111182248421
484888448812221281128488888148414414484248844484818221282184248818284114124848
12F11241888222818142481244228141118442411844844118421481F182118411184848118248
821222228441821122812484182112418818242184888418114122488221222844282181241418
42188282818888142141284888241818444824848241114282F418448881181844411488418424
414114142884F81242888111242184184242812882181118128228488141884118148448414141
88218411121444244818822282144882844884412811218248244214218128111242418218812F
14181842848881211212112844182228122288242841218881218444241841282288248848F488
411441228488112282411418881421121481488411411118882444484181884118121418114148
844484122121822828488112488212888282444818812118288412448482424888111228211418
128188188424822882181812228411141114224412412488214128128848428248448284441214
88484482182F884441148141148428211114844884411881482211418188184411121212142188
8248222148441884114128182822'H
          },
          annot {
            {
              data ftable {
                {
                  id local id 2,
                  data gene {
                    locus "RdRp"
                  },
                  partial TRUE,
                  location int {
                    from 0,
                    to 1401,
                    strand plus,
                    id gi 0670650651119141,
                    fuzz-from lim lt,
                    fuzz-to lim gt
                  },
                  xref {
                    {
                      id local id 1
                    }
                  }
                },
                {
                  id local id 3,
                  data rna {
                    type mRNA,
                    ext name "RNA dependent RNA polymerase"
                  },
                  partial TRUE,
                  location int {
                    from 0,
                    to 1401,
                    strand plus,
                    id gi 0670650651119141,
                    fuzz-from lim lt,
                    fuzz-to lim gt
                  },
                  xref {
                    {
                      data gene {
                        locus "RdRp"
                      }
                    },
                    {
                      id local id 1
                    }
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25682", version 1}, gi 067065065076256821
          },
          descr {
            title "MAG: RNA dependent RNA polymerase, partial [Partitiviridae]",
            molinfo {
              biomol peptide,
              tech concept-trans,
              completeness no-ends
            }
          },
          inst {
            repr raw,
            mol aa,
            length 467,
            seq-data iupacaa "MKTLPSREGYPVDLRKAGTDRIAEAFTRKHFGDKVVDDVTGKFHRATL
TSAEMNDDXMKFDRRHVPMIKQDPVYFSILQTLREELVPEKKIIPFTTGGAWAAPEFPKDKSPGLPYRELGYKTKGEV
LDHKSNRNEIMATWYAVGAGNVHHLPDTMIFYRAQICKTDANKIRAVFGYPLTVFSEEVRWVYPLMRYLKTCTNDFPI
AYGLEMANGGMQXINEMCNRSPPGSTYVINDYRMFDKTVPPWLIRDAFSILADCFDMGRVESSDGLIWEVDAEKSLXR
FKRMMRYFINTPVRLNSGERFMKQGGIPSGSGWTNIVGSILNAIITRYAVYNTTGSLPFADIYMGDDSFVVVEGPVNL
EDLATVVEENFGVILNTDKSWVTTSSVNVHFLGYYNLDGVAFKPQDTIIASFIYPERKPDDVQTTCARGLGQLWSSLG
SRSAQKWLELVQDIMETHSISSQWIEDYL"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "RNA dependent RNA polymerase"
                    }
                  },
                  partial TRUE,
                  location int {
                    from 0,
                    to 466,
                    id gi 067065065076256821,
                    fuzz-from lim lt,
                    fuzz-to lim gt
                  }
                }
              }
            }
          }
        }
      },
      annot {
        {
          data ftable {
            {
              id local id 1,
              data cdregion {
                frame one,
                code {
                  id 1
                }
              },
              partial TRUE,
              product whole gi 067065065076256821,
              location int {
                from 0,
                to 1401,
                strand plus,
                id gi 0670650651119141,
                fuzz-from lim lt,
                fuzz-to lim gt
              },
              xref {
                {
                  id local id 2
                },
                {
                  id local id 3
                }
              }
            }
          }
        }
      }
    }
  }
}