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Partitiviridae isolate Aedes/MsambweniAMF4/2019/partiti-like_virus-2:segment:2 hypothetical protein no blastphit (ORF1) and ORF (ORF12) genes, complete cds.

Accession:
C_AA111921.1

Seq-submit ::= {
  sub {
    contact {
      contact {
        name name {
          last "Xia",
          first "Han",
          middle "",
          initials "",
          suffix "",
          title ""
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          country "China",
          street "NO.44 Xiaohongshan",
          email "hanxia@wh.iov.cn",
          postal-code "430071"
        }
      }
    },
    cit {
      authors {
        names std {
          {
            name name {
              last "Xia",
              first "Han",
              initials "H."
            }
          }
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          sub "Hubei",
          country "China",
          street "NO.44 Xiaohongshan",
          postal-code "430071"
        }
      },
      date std {
        year 2025,
        month 7,
        day 15
      }
    },
    subtype new,
    tool "table2asn 1.28.1094"
  },
  data entrys {
    set {
      class nuc-prot,
      descr {
        source {
          org {
            taxname "Partitiviridae",
            orgname {
              mod {
                {
                  subtype isolate,
                  subname "Aedes/MsambweniAMF4/2019/partiti-like_virus-2:segme
nt:2"
                },
                {
                  subtype nat-host,
                  subname "Aedes; Host_sex: Female"
                },
                {
                  subtype metagenome-source,
                  subname "mosquito metagenome"
                }
              },
              gcode 1
            }
          },
          subtype {
            {
              subtype country,
              name "Kenya: Msambweni"
            },
            {
              subtype environmental-sample,
              name ""
            },
            {
              subtype collection-date,
              name "2019"
            },
            {
              subtype metagenomic,
              name ""
            }
          }
        },
        user {
          type str "StructuredComment",
          data {
            {
              label str "StructuredCommentPrefix",
              data str "##Assembly-Data-START##"
            },
            {
              label str "Assembly Method",
              data str "Megahit v. 1.2.9"
            },
            {
              label str "Sequencing Technology",
              data str "Illumina"
            },
            {
              label str "StructuredCommentSuffix",
              data str "##Assembly-Data-END##"
            }
          }
        },
        create-date std {
          year 2025,
          month 7,
          day 15
        }
      },
      seq-set {
        seq {
          id {
genbank { accession "C_AA111921", version 1}, gi 0670650651119211
          },
          descr {

        user {
            class "1.0",
            type str "AutodefOptions",
            data {
                {label str "UseLabels", data bool TRUE},
                {label str "LeaveParenthetical", data bool TRUE},
                {label str "SpecifyNuclearProduct", data bool TRUE},
                {label str "MaxMods", data int 0},
                {label str "FeatureListType", data str "List All Features"},
                {label str "MiscFeatRule", data str "Delete"},
                {label str "HIVRule", data str "WantBoth"},
                {label str "ModifierList",
                    data fields { {label str "OrgMods", num 1,
                            data strs {"isolate" }}}}}},
        
            molinfo {
              biomol genomic
            },
            user {
              type str "Submission",
              data {
                {
                  label str "AdditionalComment",
                  data str "GenBase"
                }
              }
            }
          },
          inst {
            repr raw,
            mol rna,
            length 1539,
            topology linear,
            strand ss,
            seq-data ncbi4na '488211144821884228828481444112148111882221812484
814111148181222182881281212814828424188182111882444811182111281888242811414188
88111FFFFFFFFFF821884228828481444112148111882221812484814111148181222182881281
212814828424188182111882444811182111281888242811414188881114288418828141182118
822844141444222811244481118128811482881128828284188814888422412128244448148221
44228841112811221888211422488841112481424414281288821144821882441182F188411848
121821188481221222424111212842124281142118811888424111288284121882121884182148
2282488F8448841881881824222824818848811F81448281814882182828182142184822441112
242141888244222114111822212822822422488121244211411284142441184114184111484228
414118221228411484122812211221844112214428128188488412118888112118111488481848
12448221214228112814421418884441821188441222811F218218444888111221848412414412
118124114148411882248181284182111188214122182248424844421881424444114184181428
288828488411418882288488228112114418114422422484418214884848444181482412124448
112428118218128221428288448818141881222181422212211118428481212242418821114418
414888448881211218288888211188211842418448221428181842812181442181881844241888
412441224821111281224121888118141842482414211184484141412188141888128148128112
121118141114481212821881418411241284114111484118411214881418418281188412111211
22882818118814841128F8221184141822211884414224214284811228884214281144181FF181
48141828188882841128811442228214112112828282F228428828148888412888482422418822
411811288181818118248142821141112218182221128824811148882F14148418818181884122
1842121120'H
          },
          annot {
            {
              data ftable {
                {
                  id local id 2,
                  data gene {
                    locus "ORF1"
                  },
                  location int {
                    from 434,
                    to 673,
                    strand plus,
                    id gi 0670650651119211
                  },
                  xref {
                    {
                      id local id 1
                    }
                  }
                },
                {
                  id local id 3,
                  data rna {
                    type mRNA,
                    ext name "hypothetical protein no blastphit"
                  },
                  location int {
                    from 434,
                    to 673,
                    strand plus,
                    id gi 0670650651119211
                  },
                  xref {
                    {
                      data gene {
                        locus "ORF1"
                      }
                    },
                    {
                      id local id 1
                    }
                  }
                },
                {
                  id local id 5,
                  data gene {
                    locus "ORF12"
                  },
                  location int {
                    from 582,
                    to 1457,
                    strand plus,
                    id gi 0670650651119211
                  },
                  xref {
                    {
                      id local id 4
                    }
                  }
                },
                {
                  id local id 6,
                  data rna {
                    type mRNA,
                    ext name "ORF"
                  },
                  location int {
                    from 582,
                    to 1457,
                    strand plus,
                    id gi 0670650651119211
                  },
                  xref {
                    {
                      data gene {
                        locus "ORF12"
                      }
                    },
                    {
                      id local id 4
                    }
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25689", version 1}, gi 067065065076256891
          },
          descr {
            title "MAG: hypothetical protein no blastphit [Partitiviridae]",
            molinfo {
              biomol peptide,
              tech concept-trans
            }
          },
          inst {
            repr raw,
            mol aa,
            length 79,
            seq-data iupacaa "MYINCTTRETLHAKQLICETSDIHIDQSSXWLIIIALVLLXRSIVHLY
QHVRKPQISAQEIPLLRRYTARTERNEDESA"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "hypothetical protein no blastphit"
                    }
                  },
                  location int {
                    from 0,
                    to 78,
                    id gi 067065065076256891
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25690", version 1}, gi 067065065076256901
          },
          descr {
            title "MAG: ORF [Partitiviridae]",
            molinfo {
              biomol peptide,
              tech concept-trans
            }
          },
          inst {
            repr raw,
            mol aa,
            length 291,
            seq-data iupacaa "MSGNRRFRPKKSHSSAVTRQELSGMKMKVPENPPEVTYQPWNQATIVD
NFNNKVVCTVHSLTRQIWDQLDPXHHGFKPCDEDNTKSEFRILIKIQTIRAWALAGKMIALSVEDFLVPNKDKAAVDQ
LCGIVDTGNANHTPALGYRLPIAHQNAVHRDSKDEFGLQHLFQIQCDGPAICYIGILWRFDGPSKLPTFNRCVEQMVR
DIRFTSTNTNRKVHSLDERLKKVNEQLDDLIDKQPSIISELSNEIPIGAAAVTFAAKDXIVDLFSELKALRTTLSPAS
SFDFVADSE"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "ORF"
                    }
                  },
                  location int {
                    from 0,
                    to 290,
                    id gi 067065065076256901
                  }
                }
              }
            }
          }
        }
      },
      annot {
        {
          data ftable {
            {
              id local id 1,
              data cdregion {
                frame one,
                code {
                  id 1
                }
              },
              product whole gi 067065065076256891,
              location int {
                from 434,
                to 673,
                strand plus,
                id gi 0670650651119211
              },
              xref {
                {
                  id local id 2
                },
                {
                  id local id 3
                }
              }
            },
            {
              id local id 4,
              data cdregion {
                frame one,
                code {
                  id 1
                }
              },
              product whole gi 067065065076256901,
              location int {
                from 582,
                to 1457,
                strand plus,
                id gi 0670650651119211
              },
              xref {
                {
                  id local id 5
                },
                {
                  id local id 6
                }
              }
            }
          }
        }
      }
    }
  }
}
资助信息
资助标题:Research on Discovery of Arthropod-borne Viral Pathogens and Infection Transmission Risk
资助机构:Ministry of Science and Technology of the People's Republic of China (MOST)
资助项目:National Key Technologies R&D Program
资助标号:2023QNTJ-03
资助标题:Cross-border Vector-borne Disease Pathogen Surveillance and Port Application
资助机构:Ministry of Science and Technology of the People's Republic of China (MOST)
资助项目:National Key Technologies R&D Program
资助标号:2022YFC2302700
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