Partitiviridae isolate Culex/JujaH1233/2023/Sonnbo_virus:segment:1 RNA dependent RNA polymerase (RdRp) gene, partial cds.

---

Seq-submit ::= {
  sub {
    contact {
      contact {
        name name {
          last "Xia",
          first "Han",
          middle "",
          initials "",
          suffix "",
          title ""
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          country "China",
          street "NO.44 Xiaohongshan",
          email "hanxia@wh.iov.cn",
          postal-code "430071"
        }
      }
    },
    cit {
      authors {
        names std {
          {
            name name {
              last "Xia",
              first "Han",
              initials "H."
            }
          }
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          sub "Hubei",
          country "China",
          street "NO.44 Xiaohongshan",
          postal-code "430071"
        }
      },
      date std {
        year 2025,
        month 7,
        day 15
      }
    },
    subtype new,
    tool "table2asn 1.28.1094"
  },
  data entrys {
    set {
      class nuc-prot,
      descr {
        source {
          org {
            taxname "Partitiviridae",
            orgname {
              mod {
                {
                  subtype isolate,
                  subname "Culex/JujaH1233/2023/Sonnbo_virus:segment:1"
                },
                {
                  subtype nat-host,
                  subname "Culex; Host_sex: Female"
                },
                {
                  subtype metagenome-source,
                  subname "mosquito metagenome"
                }
              },
              gcode 1
            }
          },
          subtype {
            {
              subtype country,
              name "Kenya: Juja"
            },
            {
              subtype environmental-sample,
              name ""
            },
            {
              subtype collection-date,
              name "2023"
            },
            {
              subtype metagenomic,
              name ""
            }
          }
        },
        user {
          type str "StructuredComment",
          data {
            {
              label str "StructuredCommentPrefix",
              data str "##Assembly-Data-START##"
            },
            {
              label str "Assembly Method",
              data str "Megahit v. 1.2.9"
            },
            {
              label str "Sequencing Technology",
              data str "Illumina"
            },
            {
              label str "StructuredCommentSuffix",
              data str "##Assembly-Data-END##"
            }
          }
        },
        create-date std {
          year 2025,
          month 7,
          day 15
        }
      },
      seq-set {
        seq {
          id {
genbank { accession "C_AA111927", version 1}, gi 0670650651119271
          },
          descr {

        user {
            class "1.0",
            type str "AutodefOptions",
            data {
                {label str "UseLabels", data bool TRUE},
                {label str "LeaveParenthetical", data bool TRUE},
                {label str "SpecifyNuclearProduct", data bool TRUE},
                {label str "MaxMods", data int 0},
                {label str "FeatureListType", data str "List All Features"},
                {label str "MiscFeatRule", data str "Delete"},
                {label str "HIVRule", data str "WantBoth"},
                {label str "ModifierList",
                    data fields { {label str "OrgMods", num 1,
                            data strs {"isolate" }}}}}},
        
            molinfo {
              biomol genomic
            },
            user {
              type str "Submission",
              data {
                {
                  label str "AdditionalComment",
                  data str "GenBase"
                }
              }
            }
          },
          inst {
            repr raw,
            mol rna,
            length 1534,
            topology linear,
            strand ss,
            seq-data ncbi4na '484282412888122184221881114888284411114121111442
882428281412281248221222211484418418484428884144888424114111844882448411448482
848411248484842211114184212244424848221821421422428182881428418484414418812112
182481818228114144488121418412484818284441488884411821488241144418882181221418
414228288182224844128188441241842144111211441181228111418114822228448281222844
114414242448818248124114241418482F84411418221824428842422411181212114818844821
288488441111441218218282441422228412122214484818888242148214188848441482418824
118114182241421124844448812228184122812124188414411441144882488812228812282414
844182244218122114114418488222482421812441488414184424122441448184284812182418
214424812214414118144184428418228118284244128421884884418844148114888412114242
482221424844884188242412421882414188184884214848882214282112114482284842112418
412218114844412484412222414114124111248248844114114182482112812882188118121224
882181281222148441414141818241114414441442488228822448821124888122112182188418
122182482112424188482484242812842122812218484884444482888222242882412182812184
442412412142848488882482142248442188418884418424882142428488421414148114882448
882182282112124241114821812488122441411248121118182128882284448818218118812812
444114224184248418441418882281284422824882188818222414241812218448241222418222
212888122422184248421482441214184844142821284112441488288428488111844884418881
182414418184414124414882442888418241411844882428411218481422214118224441422281
114812281248281124441888412221822281884218488228242242111441844181482182412481
4142'H
          },
          annot {
            {
              data ftable {
                {
                  id local id 2,
                  data gene {
                    locus "RdRp"
                  },
                  partial TRUE,
                  location int {
                    from 0,
                    to 1533,
                    strand plus,
                    id gi 0670650651119271,
                    fuzz-from lim lt,
                    fuzz-to lim gt
                  },
                  xref {
                    {
                      id local id 1
                    }
                  }
                },
                {
                  id local id 3,
                  data rna {
                    type mRNA,
                    ext name "RNA dependent RNA polymerase"
                  },
                  partial TRUE,
                  location int {
                    from 0,
                    to 1533,
                    strand plus,
                    id gi 0670650651119271,
                    fuzz-from lim lt,
                    fuzz-to lim gt
                  },
                  xref {
                    {
                      data gene {
                        locus "RdRp"
                      }
                    },
                    {
                      id local id 1
                    }
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25698", version 1}, gi 067065065076256981
          },
          descr {
            title "MAG: RNA dependent RNA polymerase, partial [Partitiviridae]",
            molinfo {
              biomol peptide,
              tech concept-trans,
              completeness no-ends
            }
          },
          inst {
            repr raw,
            mol aa,
            length 511,
            seq-data iupacaa "VLDFTMPLKFLEKTKGFALDLRPPQVDDVALRFAKKWFGEGVCERVCQ
KMHRACPSAAAILADVEDYNIVYPKRVTDDVYLGVLESVRRDFIPDEPLIPWTIGRCRKQGIPKDKSPGLPWKERGYR
TKRDVXEDPSACAEIHKYWSLVGKGHHLGAPDTQVYFRSQICGVDSNKIRATWGYPMTYTIEEGRFVYPYLEWIRHTK
KDVPVAYGVEMATGGMLYIDQAYQENRMADPNLRTALLDWSKFDKRVPAWLIRDAFEIMLQCFQLNKVLCNDDHKWDV
DPEKTKRRWKKIVNYFINTPFILPSGERYRKEGGVPSGSTFTNIIDTIVNAIVVRYCTYHVLGVFPRFDIYMGDDSCV
FVSRGIDLDAFSAVAESKFGFILNTRKSYVTGERTNITFLGYHNYYGKPMRDGDFLLASFIYPERYHGRPDPHFTAMR
AVGQMWSSLNGVLAVKWLDLIEDMETEFGFDREWFAEHVAQNPGALKYLRLTGFDPSLLHVPRRKGWIVIDVE"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "RNA dependent RNA polymerase"
                    }
                  },
                  partial TRUE,
                  location int {
                    from 0,
                    to 510,
                    id gi 067065065076256981,
                    fuzz-from lim lt,
                    fuzz-to lim gt
                  }
                }
              }
            }
          }
        }
      },
      annot {
        {
          data ftable {
            {
              id local id 1,
              data cdregion {
                frame one,
                code {
                  id 1
                }
              },
              partial TRUE,
              product whole gi 067065065076256981,
              location int {
                from 0,
                to 1533,
                strand plus,
                id gi 0670650651119271,
                fuzz-from lim lt,
                fuzz-to lim gt
              },
              xref {
                {
                  id local id 2
                },
                {
                  id local id 3
                }
              }
            }
          }
        }
      }
    }
  }
}