Partitiviridae isolate Culex/JujaH1234/2023/Sonnbo_virus:segment:1 RNA dependent RNA polymerase (RdRp) gene, partial cds.

---

Seq-submit ::= {
  sub {
    contact {
      contact {
        name name {
          last "Xia",
          first "Han",
          middle "",
          initials "",
          suffix "",
          title ""
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          country "China",
          street "NO.44 Xiaohongshan",
          email "hanxia@wh.iov.cn",
          postal-code "430071"
        }
      }
    },
    cit {
      authors {
        names std {
          {
            name name {
              last "Xia",
              first "Han",
              initials "H."
            }
          }
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          sub "Hubei",
          country "China",
          street "NO.44 Xiaohongshan",
          postal-code "430071"
        }
      },
      date std {
        year 2025,
        month 7,
        day 15
      }
    },
    subtype new,
    tool "table2asn 1.28.1094"
  },
  data entrys {
    set {
      class nuc-prot,
      descr {
        source {
          org {
            taxname "Partitiviridae",
            orgname {
              mod {
                {
                  subtype isolate,
                  subname "Culex/JujaH1234/2023/Sonnbo_virus:segment:1"
                },
                {
                  subtype nat-host,
                  subname "Culex; Host_sex: Female"
                },
                {
                  subtype metagenome-source,
                  subname "mosquito metagenome"
                }
              },
              gcode 1
            }
          },
          subtype {
            {
              subtype country,
              name "Kenya: Juja"
            },
            {
              subtype environmental-sample,
              name ""
            },
            {
              subtype collection-date,
              name "2023"
            },
            {
              subtype metagenomic,
              name ""
            }
          }
        },
        user {
          type str "StructuredComment",
          data {
            {
              label str "StructuredCommentPrefix",
              data str "##Assembly-Data-START##"
            },
            {
              label str "Assembly Method",
              data str "Megahit v. 1.2.9"
            },
            {
              label str "Sequencing Technology",
              data str "Illumina"
            },
            {
              label str "StructuredCommentSuffix",
              data str "##Assembly-Data-END##"
            }
          }
        },
        create-date std {
          year 2025,
          month 7,
          day 15
        }
      },
      seq-set {
        seq {
          id {
genbank { accession "C_AA111930", version 1}, gi 0670650651119301
          },
          descr {

        user {
            class "1.0",
            type str "AutodefOptions",
            data {
                {label str "UseLabels", data bool TRUE},
                {label str "LeaveParenthetical", data bool TRUE},
                {label str "SpecifyNuclearProduct", data bool TRUE},
                {label str "MaxMods", data int 0},
                {label str "FeatureListType", data str "List All Features"},
                {label str "MiscFeatRule", data str "Delete"},
                {label str "HIVRule", data str "WantBoth"},
                {label str "ModifierList",
                    data fields { {label str "OrgMods", num 1,
                            data strs {"isolate" }}}}}},
        
            molinfo {
              biomol genomic
            },
            user {
              type str "Submission",
              data {
                {
                  label str "AdditionalComment",
                  data str "GenBase"
                }
              }
            }
          },
          inst {
            repr raw,
            mol rna,
            length 1671,
            topology linear,
            strand ss,
            seq-data ncbi4na '8214142148428241288812218422188111488828F4111141
211114428824282814122812482212222114844184184844288841448884241141118448824484
1144848284841124848484221111418421224442484822182142142F4281828814284184844144
188121121824818182281141444881214184124848182844414888844118214882411444188821
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81222844114414242448818248124114241418482F844114182218244288424224111812121148
188448212884884411114412182182824414222284121222144848188882421482141888484414
824188241181141822414211248444488122281841228121241884144114411448824888122288
122824148441822442181221141144184882224824218124414884141844241224414481842848
121824182144248122144141181441844284182281182842441284218848844188441481148884
121142424822214248448841882424124218824141881848842148488822142821121144822848
421124184122181148444124844122224141141241112482488441141141824821128128821881
181212248821812812221484414141418182411144144414424882288224488211248881221121
821884181221824821124241884824842428128421228122184848844444828882222428824121
828121844424124121428484888824821422484421884188844184248821424284884214141481
148824488821822821121242411148218124881224414112481211181821288822844488182181
188128124441142241842484184414188822812844228248821888182224142418122184482412
2241822221288812242218424842148244121418484414282128411244148828F4284881118448
844188811824144181844141244148824428884182414118448824284112184814222141182244
414222811148122812482811244418884122218222818842184882282422421114418441814821
824124814142282222224842212411441222224841881441418124184228212142818121214148
1288211411281811411241141242848884442182488811441221424218814420'H
          },
          annot {
            {
              data ftable {
                {
                  id local id 2,
                  data gene {
                    locus "RdRp"
                  },
                  partial TRUE,
                  location int {
                    from 0,
                    to 1670,
                    strand plus,
                    id gi 0670650651119301,
                    fuzz-from lim lt,
                    fuzz-to lim gt
                  },
                  xref {
                    {
                      id local id 1
                    }
                  }
                },
                {
                  id local id 3,
                  data rna {
                    type mRNA,
                    ext name "RNA dependent RNA polymerase"
                  },
                  partial TRUE,
                  location int {
                    from 0,
                    to 1670,
                    strand plus,
                    id gi 0670650651119301,
                    fuzz-from lim lt,
                    fuzz-to lim gt
                  },
                  xref {
                    {
                      data gene {
                        locus "RdRp"
                      }
                    },
                    {
                      id local id 1
                    }
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25701", version 1}, gi 067065065076257011
          },
          descr {
            title "MAG: RNA dependent RNA polymerase, partial [Partitiviridae]",
            molinfo {
              biomol peptide,
              tech concept-trans,
              completeness no-ends
            }
          },
          inst {
            repr raw,
            mol aa,
            length 556,
            seq-data iupacaa "RAVLDFTMPLKFLEKTKGFALDLRPPQVDDVALRFAKKWFGEGVCERV
CQKMHRACPSAAAILADVEDYNIVYPKRVTDDVYLGVLESVRRDFIPDEPLIPWTIGRCRKQGIPKDKSPGLPWKERG
YRTKRDVXEDPSACAEIHKYWSLVGKGHHLGAPDTQVYFRSQICGVDSNKIRATWGYPMTYTIEEGRFVYPYLEWIRH
TKKDVPVAYGVEMATGGMLYIDQAYQENRMADPNLRTALLDWSKFDKRVPAWLIRDAFEIMLQCFQLNKVLCNDDHKW
DVDPEKTKRRWKKIVNYFINTPFILPSGERYRKEGGVPSGSTFTNIIDTIVNAIVVRYCTYHVLGVFPRFDIYMGDDS
CVFVSRGIDLDAFSAVAESKFGFILNTRKSYVTGERTNITFLGYHNYYGKPMRDGDFLLASFIYPERYHGRPDPHFTA
MRAVGQMWSSLNGVLAVKWLDLIEDMETEFGFDREWFAEHVAQNPGALKYLRLTGFDPSLLHVPRRKGWIVIDVEPPP
VPRRTPVIRRYDASQLYTEYFKNYKNEDAVWASFKDQRIR"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "RNA dependent RNA polymerase"
                    }
                  },
                  partial TRUE,
                  location int {
                    from 0,
                    to 555,
                    id gi 067065065076257011,
                    fuzz-from lim lt,
                    fuzz-to lim gt
                  }
                }
              }
            }
          }
        }
      },
      annot {
        {
          data ftable {
            {
              id local id 1,
              data cdregion {
                frame three,
                code {
                  id 1
                }
              },
              partial TRUE,
              product whole gi 067065065076257011,
              location int {
                from 0,
                to 1670,
                strand plus,
                id gi 0670650651119301,
                fuzz-from lim lt,
                fuzz-to lim gt
              },
              xref {
                {
                  id local id 2
                },
                {
                  id local id 3
                }
              }
            }
          }
        }
      }
    }
  }
}