Partitiviridae isolate Culex/JujaKMH1232/2023/Sonnbo_virus:segment:1 RNA dependent RNA polymerase (RdRp) gene, partial cds.

---

Seq-submit ::= {
  sub {
    contact {
      contact {
        name name {
          last "Xia",
          first "Han",
          middle "",
          initials "",
          suffix "",
          title ""
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          country "China",
          street "NO.44 Xiaohongshan",
          email "hanxia@wh.iov.cn",
          postal-code "430071"
        }
      }
    },
    cit {
      authors {
        names std {
          {
            name name {
              last "Xia",
              first "Han",
              initials "H."
            }
          }
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          sub "Hubei",
          country "China",
          street "NO.44 Xiaohongshan",
          postal-code "430071"
        }
      },
      date std {
        year 2025,
        month 7,
        day 15
      }
    },
    subtype new,
    tool "table2asn 1.28.1094"
  },
  data entrys {
    set {
      class nuc-prot,
      descr {
        source {
          org {
            taxname "Partitiviridae",
            orgname {
              mod {
                {
                  subtype isolate,
                  subname "Culex/JujaKMH1232/2023/Sonnbo_virus:segment:1"
                },
                {
                  subtype nat-host,
                  subname "Culex; Host_sex: Female"
                },
                {
                  subtype metagenome-source,
                  subname "mosquito metagenome"
                }
              },
              gcode 1
            }
          },
          subtype {
            {
              subtype country,
              name "Kenya: Juja"
            },
            {
              subtype environmental-sample,
              name ""
            },
            {
              subtype collection-date,
              name "2023"
            },
            {
              subtype metagenomic,
              name ""
            }
          }
        },
        user {
          type str "StructuredComment",
          data {
            {
              label str "StructuredCommentPrefix",
              data str "##Assembly-Data-START##"
            },
            {
              label str "Assembly Method",
              data str "Megahit v. 1.2.9"
            },
            {
              label str "Sequencing Technology",
              data str "Illumina"
            },
            {
              label str "StructuredCommentSuffix",
              data str "##Assembly-Data-END##"
            }
          }
        },
        create-date std {
          year 2025,
          month 7,
          day 15
        }
      },
      seq-set {
        seq {
          id {
genbank { accession "C_AA111943", version 1}, gi 0670650651119431
          },
          descr {

        user {
            class "1.0",
            type str "AutodefOptions",
            data {
                {label str "UseLabels", data bool TRUE},
                {label str "LeaveParenthetical", data bool TRUE},
                {label str "SpecifyNuclearProduct", data bool TRUE},
                {label str "MaxMods", data int 0},
                {label str "FeatureListType", data str "List All Features"},
                {label str "MiscFeatRule", data str "Delete"},
                {label str "HIVRule", data str "WantBoth"},
                {label str "ModifierList",
                    data fields { {label str "OrgMods", num 1,
                            data strs {"isolate" }}}}}},
        
            molinfo {
              biomol genomic
            },
            user {
              type str "Submission",
              data {
                {
                  label str "AdditionalComment",
                  data str "GenBase"
                }
              }
            }
          },
          inst {
            repr raw,
            mol rna,
            length 1658,
            topology linear,
            strand ss,
            seq-data ncbi4na '488214142148428241288812218422188111488828441111
412111144288242828141228124822122221148441841848442888414488842411411184488244
841144848284841124848484221111418421224442484822182142142242818288142841848441
441881211218248181822811414448812141841248481828444148888441182148824114441888
218122141841422828818222484412818844124184214411121144118122811141811482222844
828122284411441424244881824812411424141848228441141822182442884242241118121211
481884482128848844111144121821828244142222841212221448481888824214821418884844
148241882411811418224142112484444881222818412281212418841441144114488248881222
881228241484418224421812211411441848822248242181244148841418442412244144818428
481218241821442481221441411814418442841822811828424412842188488441884414811488
841211424248222142484488418824241242188241418818488421484888221428211211448228
484211241841221811484441248441222241411412411124824884411411418248211281288218
811812122488218128122214844141414181824111441444144248822882244882112488812211
218218841812218248211242418848248424281284212281221848488444448288822224288241
218281218444241241214284848888248214224844218841888441842488214242848842141414
811488244888218228211212424111482181248812244141124812111818212888228444881821
811881281244411422418424841844141888228128442282488218881822241424181221844824
122241822221288812242218424842148244121418484414282128411244148828842848811184
488441888118241441818441412441488244288841824141184488242841121848142221411822
444142228111481228124828112444188841222182228188421848822824224211144184418FFF
FFFFFFFFFFFFFFFF22222241422124114412222248418814414181241842282121428181212141
48128881141128181141124114124284888444218248881144'H
          },
          annot {
            {
              data ftable {
                {
                  id local id 2,
                  data gene {
                    locus "RdRp"
                  },
                  partial TRUE,
                  location int {
                    from 0,
                    to 1657,
                    strand plus,
                    id gi 0670650651119431,
                    fuzz-from lim lt,
                    fuzz-to lim gt
                  },
                  xref {
                    {
                      id local id 1
                    }
                  }
                },
                {
                  id local id 3,
                  data rna {
                    type mRNA,
                    ext name "RNA dependent RNA polymerase"
                  },
                  partial TRUE,
                  location int {
                    from 0,
                    to 1657,
                    strand plus,
                    id gi 0670650651119431,
                    fuzz-from lim lt,
                    fuzz-to lim gt
                  },
                  xref {
                    {
                      data gene {
                        locus "RdRp"
                      }
                    },
                    {
                      id local id 1
                    }
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25720", version 1}, gi 067065065076257201
          },
          descr {
            title "MAG: RNA dependent RNA polymerase, partial [Partitiviridae]",
            molinfo {
              biomol peptide,
              tech concept-trans,
              completeness no-ends
            }
          },
          inst {
            repr raw,
            mol aa,
            length 552,
            seq-data iupacaa "FRAVLDFTMPLKFLEKTKGFALDLRPPQVDDVALRFAKKWFGEGVCER
VCQKMHRACPSAAAILADVEDYNIVYPKRVTDDVYLGVLESVRRDFIPDEPLIPWTIGRCRKQGIPKDKSPGLPWKER
GYRTKRDVLEDPSACAEIHKYWSLVGKGHHLGAPDTQVYFRSQICGVDSNKIRATWGYPMTYTIEEGRFVYPYLEWIR
HTKKDVPVAYGVEMATGGMLYIDQAYQENRMADPNLRTALLDWSKFDKRVPAWLIRDAFEIMLQCFQLNKVLCNDDHK
WDVDPEKTKRRWKKIVNYFINTPFILPSGERYRKEGGVPSGSTFTNIIDTIVNAIVVRYCTYHVLGVFPRFDIYMGDD
SCVFVSRGIDLDAFSAVAESKFGFILNTRKSYVTGERTNITFLGYHNYYGKPMRDGDFLLASFIYPERYHGRPDPHFT
AMRAVGQMWSSLNGVLAVKWLDLIEDMETEFGFDREWFAEHVAQNPGALKYLRLTGFDPSLLHVPRRKGWXXXXXXXP
PEPRRTPVIRRYDASQLYTEYFKNYKNEDAVWASFK"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "RNA dependent RNA polymerase"
                    }
                  },
                  partial TRUE,
                  location int {
                    from 0,
                    to 551,
                    id gi 067065065076257201,
                    fuzz-from lim lt,
                    fuzz-to lim gt
                  }
                }
              }
            }
          }
        }
      },
      annot {
        {
          data ftable {
            {
              id local id 1,
              data cdregion {
                frame two,
                code {
                  id 1
                }
              },
              partial TRUE,
              product whole gi 067065065076257201,
              location int {
                from 0,
                to 1657,
                strand plus,
                id gi 0670650651119431,
                fuzz-from lim lt,
                fuzz-to lim gt
              },
              xref {
                {
                  id local id 2
                },
                {
                  id local id 3
                }
              }
            }
          }
        }
      }
    }
  }
}