Tombusviridae isolate Culex/JujaKMH562/2023/Tombus-like_virus-2 Capsid protein (capsid) and RNA directed RNA polymerase (RdRp) genes, complete cds.

---

Seq-submit ::= {
  sub {
    contact {
      contact {
        name name {
          last "Xia",
          first "Han",
          middle "",
          initials "",
          suffix "",
          title ""
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          country "China",
          street "NO.44 Xiaohongshan",
          email "hanxia@wh.iov.cn",
          postal-code "430071"
        }
      }
    },
    cit {
      authors {
        names std {
          {
            name name {
              last "Xia",
              first "Han",
              initials "H."
            }
          }
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          sub "Hubei",
          country "China",
          street "NO.44 Xiaohongshan",
          postal-code "430071"
        }
      },
      date std {
        year 2025,
        month 7,
        day 15
      }
    },
    subtype new,
    tool "table2asn 1.28.1094"
  },
  data entrys {
    set {
      class nuc-prot,
      descr {
        source {
          org {
            taxname "Tombusviridae",
            orgname {
              mod {
                {
                  subtype isolate,
                  subname "Culex/JujaKMH562/2023/Tombus-like_virus-2"
                },
                {
                  subtype nat-host,
                  subname "Culex; Host_sex: Female"
                },
                {
                  subtype metagenome-source,
                  subname "mosquito metagenome"
                }
              },
              gcode 1
            }
          },
          subtype {
            {
              subtype country,
              name "Kenya: Juja"
            },
            {
              subtype environmental-sample,
              name ""
            },
            {
              subtype collection-date,
              name "2023"
            },
            {
              subtype metagenomic,
              name ""
            }
          }
        },
        user {
          type str "StructuredComment",
          data {
            {
              label str "StructuredCommentPrefix",
              data str "##Assembly-Data-START##"
            },
            {
              label str "Assembly Method",
              data str "Megahit v. 1.2.9"
            },
            {
              label str "Sequencing Technology",
              data str "Illumina"
            },
            {
              label str "StructuredCommentSuffix",
              data str "##Assembly-Data-END##"
            }
          }
        },
        create-date std {
          year 2025,
          month 7,
          day 15
        }
      },
      seq-set {
        seq {
          id {
genbank { accession "C_AA111953", version 1}, gi 0670650651119531
          },
          descr {

        user {
            class "1.0",
            type str "AutodefOptions",
            data {
                {label str "UseLabels", data bool TRUE},
                {label str "LeaveParenthetical", data bool TRUE},
                {label str "SpecifyNuclearProduct", data bool TRUE},
                {label str "MaxMods", data int 0},
                {label str "FeatureListType", data str "List All Features"},
                {label str "MiscFeatRule", data str "Delete"},
                {label str "HIVRule", data str "WantBoth"},
                {label str "ModifierList",
                    data fields { {label str "OrgMods", num 1,
                            data strs {"isolate" }}}}}},
        
            molinfo {
              biomol genomic
            },
            user {
              type str "Submission",
              data {
                {
                  label str "AdditionalComment",
                  data str "GenBase"
                }
              }
            }
          },
          inst {
            repr raw,
            mol rna,
            length 3388,
            topology linear,
            strand ss,
            seq-data ncbi4na '482248811448124221421482288288211444428444221811
888284224882482424884888248848211848221882422884288881888224888228482482824822
184228411241288248284282428241848888284248284881488244484441821822148248184222
448884284218888411842212484841442842211811122284884422844488484882484882484414
821882248228441884482881884842221188244424484482842881448244421884148448141842
821884811814822822848441422FFFFFFFFFF48882284824828248221842284112412882482842
824282418488882842482848814882444844418218221482481842224488842842188884118422
124848414428422118111222848844228444884848824848824844148218822482284488844828
8188484222118824442448448284288144824442188414844814821212188811814824111F4428
221214414412818812118414218281221282118422241228114214122122422241188444212118
114122118221441244118412822124112124112121122214422112144488818844214228212124
844218821111842142111224442181241284418418222122241128112141242141111218241424
142141241148248821442184412414124121441112141118111142114424118441218841211241
112112424124112442141118818442221422228841141144128428442481228811244121112124
144211118228811211441281248122181228248211188114211842481288242141448144121422
841821218288124141111448218421141248418211411121828241288214428211441212122188
228212282124112141218218421214442182181218211842228111221144211124218812881222
288284481288244214122211448241412118821441184482441111241182444222281241882122
114122481214281282214118818228412112818444884448242848144184412242211181228818
882224828281282111228412414844812812812221488142148411121128422428422282144112
14421828822441118828822241481F412422421448182112111282812141212182144488812242
481218228141481844122218211414818488448142184214224222148111141188842812211128
422881412412818818141412441881181148124121881211221882128111188414111184111112
148111812111421224241281181214421241111221182882118181184818441144818481111421
884411212181284888111218218141288121818218888441111441121112411118181421412111
188818111884821214111844211844111122411441412212111122882412421212481121481411
212114111881888112211888881842428842882228214112481111411182111112182442111141
282282121421111842141121141821441414121844121484111441124211211821441411481412
121821182142112121188182118181421181281114414881184888211281448181114448411482
284424112441418412882188288888121112111221488412188412111821111421181288111121
184118184411122411184212111828121241112182212128482411888848421112111881424882
148821124441214218484281888111412188412141188812142111888441184121112484211481
412812812141121818881184411848421218441118844111184184111412121221188441211411
882111241181812818812181288818288411411211288121441214418211241214484211241211
212184111881214812111818884411111411818211241181188111411112111412421111411118
122148121411881121488142184184414424818412414421881412881114111812121828111281
182118141188114118181812188112812228818184441828181441288114812282421812112142
182184128188821212412121114211821411241218111812122412121118414288111211821181
211221881281218214421882141122111112112241212181818144111181242141281121441288
1128412124421184411184411122221124411211211244212F211FF24214421124F11214412118
281124411241184481288242814444212181122122114442181121181884484124211121121121
128482828818121218282241422212214FFF181421412111188818111884821214111844211844
111122411441412212111122882412421212481121481411212114111881888112848282881812
1218284124284224124114814142244848141828244844824224818218811111'H
          },
          annot {
            {
              data ftable {
                {
                  id local id 2,
                  data gene {
                    locus "capsid"
                  },
                  location int {
                    from 691,
                    to 1692,
                    strand plus,
                    id gi 0670650651119531
                  },
                  xref {
                    {
                      id local id 1
                    }
                  }
                },
                {
                  id local id 3,
                  data rna {
                    type mRNA,
                    ext name "Capsid protein"
                  },
                  location int {
                    from 691,
                    to 1692,
                    strand plus,
                    id gi 0670650651119531
                  },
                  xref {
                    {
                      data gene {
                        locus "capsid"
                      }
                    },
                    {
                      id local id 1
                    }
                  }
                },
                {
                  id local id 5,
                  data gene {
                    locus "RdRp"
                  },
                  location int {
                    from 1338,
                    to 3017,
                    strand plus,
                    id gi 0670650651119531
                  },
                  xref {
                    {
                      id local id 4
                    }
                  }
                },
                {
                  id local id 6,
                  data rna {
                    type mRNA,
                    ext name "RNA directed RNA polymerase"
                  },
                  location int {
                    from 1338,
                    to 3017,
                    strand plus,
                    id gi 0670650651119531
                  },
                  xref {
                    {
                      data gene {
                        locus "RdRp"
                      }
                    },
                    {
                      id local id 4
                    }
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25731", version 1}, gi 067065065076257311
          },
          descr {
            title "MAG: Capsid protein [Tombusviridae]",
            molinfo {
              biomol peptide,
              tech concept-trans
            }
          },
          inst {
            repr raw,
            mol aa,
            length 333,
            seq-data iupacaa "MSIYHSMPDLSRPPPELGTIRPIQDGMTPRTRTQPRPTGFIGSLTRGI
QNAANRAYDWMIPPELTDAENIERADEVVQAWTRRQETEIKARRMDIDNETTRRTAEIMAQPLEEGLLAYLNGQTRGK
ILNKDYVPYLVKLSNAYFAEVGQPDHILREKVMQDVIKKHLDFRLKDTPFLTSRTDIMHRASYINALNQGKRITYPFW
YFGRPKVETIQEWSENESGPYDSPRPYSYSRIILTTMGWVAVGWTAKYLISRLYSNLTSGTTTQLAVKQLPLPSGTGI
FRKFFPSXTPQVSTNSTDTSGFTAYILEYGPIKSMLVACSRPVKEFATKLP"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "Capsid protein"
                    }
                  },
                  location int {
                    from 0,
                    to 332,
                    id gi 067065065076257311
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25732", version 1}, gi 067065065076257321
          },
          descr {
            title "MAG: RNA directed RNA polymerase [Tombusviridae]",
            molinfo {
              biomol peptide,
              tech concept-trans
            }
          },
          inst {
            repr raw,
            mol aa,
            length 559,
            seq-data iupacaa "MVGKRIGPLRFTKTVQLLQNYPDNYGLGRCRMDRQIPYFPSLLKPDEW
YYYPVSSETTAAALRNRHLPEILPEXDAAGINKLYRHIRVYRVHPRVWTHQEYVGSMQPPSKRICYQTALDDYYRDGL
ISTTLQPFTKIEKMKNSKYKAPRLIQARKPIFNIMYGRYVKALEHILFKHHRLTYHFGKGTNENIADKIYKLSQKWQW
KTEGDHKTFDAHVTVEHKKLFNQFLCACFPQNVKEIKNIGKRLLTAKCRTRSGETWTVKGTQQSGEVDTSISNTIINI
AILKELMFQLGIKGEVLANGDDFILFTNKPVDIDKSKAILKTMNMETEMHKSTRNIHTVEFCANKLAFSSTGQHVLFK
DIDRIYSKFGMTNVQVDYYRTYLMECAHGNWKMMKDTPIGQEFKRIYYYILYLEEQLTGQDQRQVQRQHMKLQYKYLE
KEYQRIIKENKDAKENTSTELTVSMMEAYDEALDLKKYTSKLINRIKNIYINYPYMGSIGLKYLAYNSIMTISHDTKQ
SERHKYTDTNELKQSIQPLLHQAFRTKNNRHIYRKIRRLTGLN"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "RNA directed RNA polymerase"
                    }
                  },
                  location int {
                    from 0,
                    to 558,
                    id gi 067065065076257321
                  }
                }
              }
            }
          }
        }
      },
      annot {
        {
          data ftable {
            {
              id local id 1,
              data cdregion {
                frame one,
                code {
                  id 1
                }
              },
              product whole gi 067065065076257311,
              location int {
                from 691,
                to 1692,
                strand plus,
                id gi 0670650651119531
              },
              xref {
                {
                  id local id 2
                },
                {
                  id local id 3
                }
              }
            },
            {
              id local id 4,
              data cdregion {
                frame one,
                code {
                  id 1
                }
              },
              product whole gi 067065065076257321,
              location int {
                from 1338,
                to 3017,
                strand plus,
                id gi 0670650651119531
              },
              xref {
                {
                  id local id 5
                },
                {
                  id local id 6
                }
              }
            }
          }
        }
      }
    }
  }
}