Partitiviridae isolate Culex/JujaKMH562/2023/Sonnbo_virus:segment:1 RNA dependent RNA polymerase (RdRp) gene, partial cds.

---

Seq-submit ::= {
  sub {
    contact {
      contact {
        name name {
          last "Xia",
          first "Han",
          middle "",
          initials "",
          suffix "",
          title ""
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          country "China",
          street "NO.44 Xiaohongshan",
          email "hanxia@wh.iov.cn",
          postal-code "430071"
        }
      }
    },
    cit {
      authors {
        names std {
          {
            name name {
              last "Xia",
              first "Han",
              initials "H."
            }
          }
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          sub "Hubei",
          country "China",
          street "NO.44 Xiaohongshan",
          postal-code "430071"
        }
      },
      date std {
        year 2025,
        month 7,
        day 15
      }
    },
    subtype new,
    tool "table2asn 1.28.1094"
  },
  data entrys {
    set {
      class nuc-prot,
      descr {
        source {
          org {
            taxname "Partitiviridae",
            orgname {
              mod {
                {
                  subtype isolate,
                  subname "Culex/JujaKMH562/2023/Sonnbo_virus:segment:1"
                },
                {
                  subtype nat-host,
                  subname "Culex; Host_sex: Female"
                },
                {
                  subtype metagenome-source,
                  subname "mosquito metagenome"
                }
              },
              gcode 1
            }
          },
          subtype {
            {
              subtype country,
              name "Kenya: Juja"
            },
            {
              subtype environmental-sample,
              name ""
            },
            {
              subtype collection-date,
              name "2023"
            },
            {
              subtype metagenomic,
              name ""
            }
          }
        },
        user {
          type str "StructuredComment",
          data {
            {
              label str "StructuredCommentPrefix",
              data str "##Assembly-Data-START##"
            },
            {
              label str "Assembly Method",
              data str "Megahit v. 1.2.9"
            },
            {
              label str "Sequencing Technology",
              data str "Illumina"
            },
            {
              label str "StructuredCommentSuffix",
              data str "##Assembly-Data-END##"
            }
          }
        },
        create-date std {
          year 2025,
          month 7,
          day 15
        }
      },
      seq-set {
        seq {
          id {
genbank { accession "C_AA111956", version 1}, gi 0670650651119561
          },
          descr {

        user {
            class "1.0",
            type str "AutodefOptions",
            data {
                {label str "UseLabels", data bool TRUE},
                {label str "LeaveParenthetical", data bool TRUE},
                {label str "SpecifyNuclearProduct", data bool TRUE},
                {label str "MaxMods", data int 0},
                {label str "FeatureListType", data str "List All Features"},
                {label str "MiscFeatRule", data str "Delete"},
                {label str "HIVRule", data str "WantBoth"},
                {label str "ModifierList",
                    data fields { {label str "OrgMods", num 1,
                            data strs {"isolate" }}}}}},
        
            molinfo {
              biomol genomic
            },
            user {
              type str "Submission",
              data {
                {
                  label str "AdditionalComment",
                  data str "GenBase"
                }
              }
            }
          },
          inst {
            repr raw,
            mol rna,
            length 1674,
            topology linear,
            strand ss,
            seq-data ncbi2na 'BD224B9D87F14E53C0BF7A0084029F6772171B51542E8E3B
A7F8AFE6080EBDAE0AEDEE06EEE5008E45A9BB5349259CDF278EE8A3C4136CCD708ABC48E1BB37
A8BFE834BD82A3F4C5238977CD5BA1CFA18E4A010A0C5C08C2D57ADC57A0A266BCDB182623B5E8
235369F99603110B3EB47EFA00A134DDA255E1152BB3FD92D23FBA2D8F60C2358906EABC57385C
463E28282BDBF15F1762E8D6931420A3BD5B64C68BE23A6168ACE7B13634A6C5288328E9E35C37
9A1E4FBE8FA2C2FE1099B549BAF8F66193D88F3BE4BBF527410AD7B90638530BA86E8558821806
DBE8208DB41C7D3C3116F4C7152E8888CD80A2A29BD7D6BD06FC504D3E314DB4198FB6E671E45C
53BBEAADFD567D84DC4EA61849EEFF6D25BA4F8FE8E6F499EF9222C2F6BF4D7411980B4C6F1688
1B103347F5EAF34C3C71A8258E6E3A23F5C7A5DBD3F35626314EB6158D547F16539B92DA123BA2
74781A2F7E7BC0EBE8FC3628CE8868BDA7F8D883AF67813B254835A895C0B171B706A3F854D5CF
93BD7659028E8CB4D86C897555B9460A155B8F288C6397449CC448B1FC20730818219EFEA4DBF0
A14993CA50'H
          },
          annot {
            {
              data ftable {
                {
                  id local id 2,
                  data gene {
                    locus "RdRp"
                  },
                  partial TRUE,
                  location int {
                    from 0,
                    to 1673,
                    strand plus,
                    id gi 0670650651119561,
                    fuzz-from lim lt,
                    fuzz-to lim gt
                  },
                  xref {
                    {
                      id local id 1
                    }
                  }
                },
                {
                  id local id 3,
                  data rna {
                    type mRNA,
                    ext name "RNA dependent RNA polymerase"
                  },
                  partial TRUE,
                  location int {
                    from 0,
                    to 1673,
                    strand plus,
                    id gi 0670650651119561,
                    fuzz-from lim lt,
                    fuzz-to lim gt
                  },
                  xref {
                    {
                      data gene {
                        locus "RdRp"
                      }
                    },
                    {
                      id local id 1
                    }
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25735", version 1}, gi 067065065076257351
          },
          descr {
            title "MAG: RNA dependent RNA polymerase, partial [Partitiviridae]",
            molinfo {
              biomol peptide,
              tech concept-trans,
              completeness no-ends
            }
          },
          inst {
            repr raw,
            mol aa,
            length 558,
            seq-data iupacaa "FRAVLDFTMPLKFLEKTKGFALDLRPPQVDDVALRFAKKWFGEGVCER
VCQKMHRACPSAAAILADVEDYNIVYPKRVTDDVYLGVLESVRRDFIPDEPLIPWTIGRCRKQGIPKDKSPGLPWKER
GYRTKRDVLEDPSACAEIHKYWSLVGKGHHLGAPDTQVYFRSQICGVDSNKIRATWGYPMTYTIEEGRFVYPYLEWIR
HTKKDVPVAYGVEMATGGMLYIDQAYQENRMADPNLRTALLDWSKFDKRVPAWLIRDAFEIMLQCFQLNKVLCNDDHK
WDVDPEKTKRRWKKIVNYFINTPFILPSGERYRKEGGVPSGSTFTNIIDTIVNAIVVRYCTYHVLGVFPRFDIYMGDD
SCVFVSRGIDLDAFSAVAESKFGFILNTRKSYVTGERTNITFLGYHNYYGKPMRDGDFLLASFIYPERYHGRPDPHFT
AMRAVGQMWSSLNGVLAVKWLDLIEDMETEFGFDREWFAEHVAQNPGALKYLRLTGFDPSLLHVPRRKGWIVIDVEPP
PVPRRTPVIRRYDASQLYTEYFKNYKNEDAVWASFKDQRIRP"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "RNA dependent RNA polymerase"
                    }
                  },
                  partial TRUE,
                  location int {
                    from 0,
                    to 557,
                    id gi 067065065076257351,
                    fuzz-from lim lt,
                    fuzz-to lim gt
                  }
                }
              }
            }
          }
        }
      },
      annot {
        {
          data ftable {
            {
              id local id 1,
              data cdregion {
                frame two,
                code {
                  id 1
                }
              },
              partial TRUE,
              product whole gi 067065065076257351,
              location int {
                from 0,
                to 1673,
                strand plus,
                id gi 0670650651119561,
                fuzz-from lim lt,
                fuzz-to lim gt
              },
              xref {
                {
                  id local id 2
                },
                {
                  id local id 3
                }
              }
            }
          }
        }
      }
    }
  }
}