Tombusviridae isolate Culex/JujaKMH563/2023/Tombus-like_virus-2 Capsid protein (capsid) and RNA directed RNA polymerase (RdRp) genes, complete cds.

---

Seq-submit ::= {
  sub {
    contact {
      contact {
        name name {
          last "Xia",
          first "Han",
          middle "",
          initials "",
          suffix "",
          title ""
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          country "China",
          street "NO.44 Xiaohongshan",
          email "hanxia@wh.iov.cn",
          postal-code "430071"
        }
      }
    },
    cit {
      authors {
        names std {
          {
            name name {
              last "Xia",
              first "Han",
              initials "H."
            }
          }
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          sub "Hubei",
          country "China",
          street "NO.44 Xiaohongshan",
          postal-code "430071"
        }
      },
      date std {
        year 2025,
        month 7,
        day 15
      }
    },
    subtype new,
    tool "table2asn 1.28.1094"
  },
  data entrys {
    set {
      class nuc-prot,
      descr {
        source {
          org {
            taxname "Tombusviridae",
            orgname {
              mod {
                {
                  subtype isolate,
                  subname "Culex/JujaKMH563/2023/Tombus-like_virus-2"
                },
                {
                  subtype nat-host,
                  subname "Culex; Host_sex: Female"
                },
                {
                  subtype metagenome-source,
                  subname "mosquito metagenome"
                }
              },
              gcode 1
            }
          },
          subtype {
            {
              subtype country,
              name "Kenya: Juja"
            },
            {
              subtype environmental-sample,
              name ""
            },
            {
              subtype collection-date,
              name "2023"
            },
            {
              subtype metagenomic,
              name ""
            }
          }
        },
        user {
          type str "StructuredComment",
          data {
            {
              label str "StructuredCommentPrefix",
              data str "##Assembly-Data-START##"
            },
            {
              label str "Assembly Method",
              data str "Megahit v. 1.2.9"
            },
            {
              label str "Sequencing Technology",
              data str "Illumina"
            },
            {
              label str "StructuredCommentSuffix",
              data str "##Assembly-Data-END##"
            }
          }
        },
        create-date std {
          year 2025,
          month 7,
          day 15
        }
      },
      seq-set {
        seq {
          id {
genbank { accession "C_AA111958", version 1}, gi 0670650651119581
          },
          descr {

        user {
            class "1.0",
            type str "AutodefOptions",
            data {
                {label str "UseLabels", data bool TRUE},
                {label str "LeaveParenthetical", data bool TRUE},
                {label str "SpecifyNuclearProduct", data bool TRUE},
                {label str "MaxMods", data int 0},
                {label str "FeatureListType", data str "List All Features"},
                {label str "MiscFeatRule", data str "Delete"},
                {label str "HIVRule", data str "WantBoth"},
                {label str "ModifierList",
                    data fields { {label str "OrgMods", num 1,
                            data strs {"isolate" }}}}}},
        
            molinfo {
              biomol genomic
            },
            user {
              type str "Submission",
              data {
                {
                  label str "AdditionalComment",
                  data str "GenBase"
                }
              }
            }
          },
          inst {
            repr raw,
            mol rna,
            length 3537,
            topology linear,
            strand ss,
            seq-data ncbi4na '482248811448124221421482288288211444428444221811
888284224882482424884888248848211848221882422884288881888224888228482482824822
184228411241288248284282428241848888284248284881488244484441821822148248184222
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821882248228441884482881884842221188244424484482842881448244421884148448141842
821884811814822822848441422FFFFFFFFFF48184481248148228848811441888842282484888
482248811448124221421482288288211444428444221811888284224882482424884888248848
211848221882422884288881888224888228482482824822184228411241288248284282428241
848888284248284881488244484441821822148248184222448884284218888411842212484841
442842211811122284884422844488484882484882484414821882248228441884482881884842
22118824442448448284288144824442188414844814821212188811814824111F442822121441
441281881211841421828122128211842224122811421412212242224118844421211811412211
822144124411841282212411212411212112221442211214448881884421422821212484421882
111184214211122444218124128441841822212224112811214124214111121824142414214124
114824882144218441241412412144111214111811114211442411844121884121124111211242
412411244214111881844222142222884114114412842844248122881124412111212414421111
822881121144128124812218122824821118811421184248128824214144814412142284182121
828812414111144821842114124841821141112182824128821442821144121212218822821228
212411214121821842181444218218121821184222811182114481112421881288122228828448
128824421412281144824141211882144118448244111124118244422228124188212211412248
121428128221411881822841211281844488444824284814418441224221118122881888222482
828128211122841241484481281281222148814214841112112842242842228214411214421828
822441118828822241481F41242242144818211211128281214121218214448881224248121822
814148184412221821141481848844814218421422422214811114118884281221112842288141
241281881814141244188118114812412188121122188212811118841411118411111214811181
211142122424128118121442124111122118288211818118481844114481848111142188441121
218128488811121821814128812181821888844111144112111241111818142141211118881811
188482121411184421184411112241144141221211112288241242121248112148141121211411
188188811221188888184242884288222821411248111141118211111218244211114128228212
142111184214112114182144141412184412148411144112421121182144141148141212182118
214211212118818211818142118128111441488118488821128144818111444841148228442411
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441112241118421211182812124111218221212848241188884842111211188142488214882112
444121421848428188811141218841214118881214211188844118412111248421148141281281
214112181888118441184842121844111884411118418411141212122118844121141188211124
118181281881218128881828841141121128812144121441821124121448421124121121218411
188121481211181888441111141181821124118118811141111211141242111141111812214812
141188112148814218418441442481841241442188141288111411181812182811128118211814
118811411818181211811281222881818444182818144128811481228242181211214218218412
818882121241212111421182141124121811181212241212111841428811121182118121122188
128121821442188214112211111211224121218181814411118124214128112144128811284121
244211844111844111222211244112112112442128211212421442112441121441211828112441
124118448128824281444421218112212211444218112118188448412421112112112112848282
881812121828224142221FFFFFFF18142141211118881811188482121411184421184411112241
144141221211112288241242121248112148141121211411188188811284828288181212182841
2428422412411481414224484814182824484448242248182188111110'H
          },
          annot {
            {
              data ftable {
                {
                  id local id 2,
                  data gene {
                    locus "capsid"
                  },
                  location int {
                    from 839,
                    to 1840,
                    strand plus,
                    id gi 0670650651119581
                  },
                  xref {
                    {
                      id local id 1
                    }
                  }
                },
                {
                  id local id 3,
                  data rna {
                    type mRNA,
                    ext name "Capsid protein"
                  },
                  location int {
                    from 839,
                    to 1840,
                    strand plus,
                    id gi 0670650651119581
                  },
                  xref {
                    {
                      data gene {
                        locus "capsid"
                      }
                    },
                    {
                      id local id 1
                    }
                  }
                },
                {
                  id local id 5,
                  data gene {
                    locus "RdRp"
                  },
                  location int {
                    from 1486,
                    to 3165,
                    strand plus,
                    id gi 0670650651119581
                  },
                  xref {
                    {
                      id local id 4
                    }
                  }
                },
                {
                  id local id 6,
                  data rna {
                    type mRNA,
                    ext name "RNA directed RNA polymerase"
                  },
                  location int {
                    from 1486,
                    to 3165,
                    strand plus,
                    id gi 0670650651119581
                  },
                  xref {
                    {
                      data gene {
                        locus "RdRp"
                      }
                    },
                    {
                      id local id 4
                    }
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25736", version 1}, gi 067065065076257361
          },
          descr {
            title "MAG: Capsid protein [Tombusviridae]",
            molinfo {
              biomol peptide,
              tech concept-trans
            }
          },
          inst {
            repr raw,
            mol aa,
            length 333,
            seq-data iupacaa "MSIYHSMPDLSRPPPELGTIRPIQDGMTPRTRTQPRPTGFIGSLTRGI
QNAANRAYDWMIPPELTDAENIERADEVVQAWTRRQETEIKARRMDIDNETTRRTAEIMAQPLEEGLLAYLNGQTRGK
ILNKDYVPYLVKLSNAYFAEVGQPDHILREKVMQDVIKKHLDFRLKDTPFLTSRTDIMHRASYINALNQGKRITYPFW
YFGRPKVETIQEWSENESGPYDSPRPYSYSRIILTTMGWVAVGWTAKYLISRLYSNLTSGTTTQLAVKQLPLPSGTGI
FRKFFPSXTPQVSTNSTDTSGFTAYILEYGPIKSMLVACSRPVKEFATKLP"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "Capsid protein"
                    }
                  },
                  location int {
                    from 0,
                    to 332,
                    id gi 067065065076257361
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25737", version 1}, gi 067065065076257371
          },
          descr {
            title "MAG: RNA directed RNA polymerase [Tombusviridae]",
            molinfo {
              biomol peptide,
              tech concept-trans
            }
          },
          inst {
            repr raw,
            mol aa,
            length 559,
            seq-data iupacaa "MVGKRIGPLRFTKTVQLLQNYPDNYGLGRCRMDRQIPYFPSLLKPDEW
YYYPVSSETTAAALRNRHLPEILPEXDAAGINKLYRHIRVYRVHPRVWTHQEYVGSMQPPSKRICYQTALDDYYRDGL
ISTTLQPFTKIEKMKNSKYKAPRLIQARKPIFNIMYGRYVKALEHILFKHHRLTYHFGKGTNENIADKIYKLSQKWQW
KTEGDHKTFDAHVTVEHKKLFNQFLCACFPQNVKEIKNIGKRLLTAKCRTRSGETWTVKGTQQSGEVDTSISNTIINI
AILKELMFQLGIKGEVLANGDDFILFTNKPVDIDKSKAILKTMNMETEMHKSTRNIHTVEFCANKLAFSSTGQHVLFK
DIDRIYSKFGMTNVQVDYYRTYLMECAHGNWKMMKDTPIGQEFKRIYYYILYLEEQLTGQDQRQVQRQHMKLQYKYLE
KEYQRIIKENKDAKENTSTELTVSMMEAYDEALDLKKYTSKLINRIKNIYNNYPYMGSIGLKYLAYNSIMTISHDTKQ
SERHKYTDTNELKQSIQPLLHQAFRTKNNRHIYRKIRRLTGLN"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "RNA directed RNA polymerase"
                    }
                  },
                  location int {
                    from 0,
                    to 558,
                    id gi 067065065076257371
                  }
                }
              }
            }
          }
        }
      },
      annot {
        {
          data ftable {
            {
              id local id 1,
              data cdregion {
                frame one,
                code {
                  id 1
                }
              },
              product whole gi 067065065076257361,
              location int {
                from 839,
                to 1840,
                strand plus,
                id gi 0670650651119581
              },
              xref {
                {
                  id local id 2
                },
                {
                  id local id 3
                }
              }
            },
            {
              id local id 4,
              data cdregion {
                frame one,
                code {
                  id 1
                }
              },
              product whole gi 067065065076257371,
              location int {
                from 1486,
                to 3165,
                strand plus,
                id gi 0670650651119581
              },
              xref {
                {
                  id local id 5
                },
                {
                  id local id 6
                }
              }
            }
          }
        }
      }
    }
  }
}