Tombusviridae isolate Culex/JujaKMH564/2023/Tombus-like_virus-2 Capsid protein (capsid) and RNA directed RNA polymerase (RdRp) genes, complete cds.

---

Seq-submit ::= {
  sub {
    contact {
      contact {
        name name {
          last "Xia",
          first "Han",
          middle "",
          initials "",
          suffix "",
          title ""
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          country "China",
          street "NO.44 Xiaohongshan",
          email "hanxia@wh.iov.cn",
          postal-code "430071"
        }
      }
    },
    cit {
      authors {
        names std {
          {
            name name {
              last "Xia",
              first "Han",
              initials "H."
            }
          }
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          sub "Hubei",
          country "China",
          street "NO.44 Xiaohongshan",
          postal-code "430071"
        }
      },
      date std {
        year 2025,
        month 7,
        day 15
      }
    },
    subtype new,
    tool "table2asn 1.28.1094"
  },
  data entrys {
    set {
      class nuc-prot,
      descr {
        source {
          org {
            taxname "Tombusviridae",
            orgname {
              mod {
                {
                  subtype isolate,
                  subname "Culex/JujaKMH564/2023/Tombus-like_virus-2"
                },
                {
                  subtype nat-host,
                  subname "Culex; Host_sex: Female"
                },
                {
                  subtype metagenome-source,
                  subname "mosquito metagenome"
                }
              },
              gcode 1
            }
          },
          subtype {
            {
              subtype country,
              name "Kenya: Juja"
            },
            {
              subtype environmental-sample,
              name ""
            },
            {
              subtype collection-date,
              name "2023"
            },
            {
              subtype metagenomic,
              name ""
            }
          }
        },
        user {
          type str "StructuredComment",
          data {
            {
              label str "StructuredCommentPrefix",
              data str "##Assembly-Data-START##"
            },
            {
              label str "Assembly Method",
              data str "Megahit v. 1.2.9"
            },
            {
              label str "Sequencing Technology",
              data str "Illumina"
            },
            {
              label str "StructuredCommentSuffix",
              data str "##Assembly-Data-END##"
            }
          }
        },
        create-date std {
          year 2025,
          month 7,
          day 15
        }
      },
      seq-set {
        seq {
          id {
genbank { accession "C_AA111964", version 1}, gi 0670650651119641
          },
          descr {

        user {
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            type str "AutodefOptions",
            data {
                {label str "UseLabels", data bool TRUE},
                {label str "LeaveParenthetical", data bool TRUE},
                {label str "SpecifyNuclearProduct", data bool TRUE},
                {label str "MaxMods", data int 0},
                {label str "FeatureListType", data str "List All Features"},
                {label str "MiscFeatRule", data str "Delete"},
                {label str "HIVRule", data str "WantBoth"},
                {label str "ModifierList",
                    data fields { {label str "OrgMods", num 1,
                            data strs {"isolate" }}}}}},
        
            molinfo {
              biomol genomic
            },
            user {
              type str "Submission",
              data {
                {
                  label str "AdditionalComment",
                  data str "GenBase"
                }
              }
            }
          },
          inst {
            repr raw,
            mol rna,
            length 3314,
            topology linear,
            strand ss,
            seq-data ncbi4na '482248811448124221421482288288211444428444221811
888284224882482424884888248848211848221882422884288881888284888228482482824822
184228411241288248284282428241848888284248284881488244484441821822148248184222
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821882248228441884482881884842221188244424484482842881448244421884148448141842
821884811814822822848441422FFFFFFFFFF42824282418488882842482848814882444844418
218221482481842224488842842188884118422124848414428422118111222848844228444884
848824848824844148218822482284418844828818848422211882444244844828428814482444
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422241228114214122122422241188444212118114122118221441244118412822124112124112
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22148814214841112112842242842228214411214421828822441118828822241481F412422421
448182112111282812141212182144488812242481218228141481844122218211414818488448
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211288121441214418211241214484211241211212184111881214812111818884411111411818
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412414421881412881114111812121828111281182118141188114118181812188112812228818
184441828181441288114812282421812112142182184128188821212412121114211821411241
218111812122412121118414288111211821181211221881281218214421882141122111112112
241212181818144111181242141281121441288112841212442118441118441112222112441121
121124421282112124214421124411214412118281124411241184481288242814444212181122
122114442181121181884484124211121121121128482828818121218282241422211214FFF181
421412111188818111884821214111844211844111122411441412212111122882412421212481
12148141121211411188188811284828288181212182888222821411248111141118'H
          },
          annot {
            {
              data ftable {
                {
                  id local id 2,
                  data gene {
                    locus "capsid"
                  },
                  location int {
                    from 652,
                    to 1653,
                    strand plus,
                    id gi 0670650651119641
                  },
                  xref {
                    {
                      id local id 1
                    }
                  }
                },
                {
                  id local id 3,
                  data rna {
                    type mRNA,
                    ext name "Capsid protein"
                  },
                  location int {
                    from 652,
                    to 1653,
                    strand plus,
                    id gi 0670650651119641
                  },
                  xref {
                    {
                      data gene {
                        locus "capsid"
                      }
                    },
                    {
                      id local id 1
                    }
                  }
                },
                {
                  id local id 5,
                  data gene {
                    locus "RdRp"
                  },
                  location int {
                    from 1299,
                    to 2978,
                    strand plus,
                    id gi 0670650651119641
                  },
                  xref {
                    {
                      id local id 4
                    }
                  }
                },
                {
                  id local id 6,
                  data rna {
                    type mRNA,
                    ext name "RNA directed RNA polymerase"
                  },
                  location int {
                    from 1299,
                    to 2978,
                    strand plus,
                    id gi 0670650651119641
                  },
                  xref {
                    {
                      data gene {
                        locus "RdRp"
                      }
                    },
                    {
                      id local id 4
                    }
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25745", version 1}, gi 067065065076257451
          },
          descr {
            title "MAG: Capsid protein [Tombusviridae]",
            molinfo {
              biomol peptide,
              tech concept-trans
            }
          },
          inst {
            repr raw,
            mol aa,
            length 333,
            seq-data iupacaa "MSIYHSMPDLSRPPPELGTIRPIQDGMTPRTRTQPRPTGFIGSLTRGI
QNAANRAYDWMIPPELTDAENIERADEVVQAWTRRQETEIKARRMDIDNETTRRTAEIMAQPLEEGLLAYLNGQTRGK
ILNKDYVPYLVKLSNAYFAEVGQPDHILREKVMQDVIKKHLDFRLKDTPFLTSRTDIMHRASYINALNQGKRITYPFW
YFGRPKVETIQEWSENESGPYDSPRPYSYSRIILTTMGWVAVGWTAKYLISRLYSNLTSGTTTQLAVKQLPLPSGTGI
FRKFFPSXTPQVSTNSTDTSGFTAYILEYGPIKSMLVACSRPVKEFATKLP"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "Capsid protein"
                    }
                  },
                  location int {
                    from 0,
                    to 332,
                    id gi 067065065076257451
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25746", version 1}, gi 067065065076257461
          },
          descr {
            title "MAG: RNA directed RNA polymerase [Tombusviridae]",
            molinfo {
              biomol peptide,
              tech concept-trans
            }
          },
          inst {
            repr raw,
            mol aa,
            length 559,
            seq-data iupacaa "MVGKRIGPLRFTKTVQLLQNYPDNYGLGRCRMDRQIPYFPSLLKPDEW
YYYPVSSETTAAALRNRHLPEILPEXDAAGINKLYRHIRVYRVHPRVWTHQEYVGSMQPPSKRICYQTALDDYYRDGL
ISTTLQPFTKIEKMKNSKYKAPRLIQARKPIFNIMYGRYVKALEHILFKHHRLTYHFGKGTNENIADKIYKLSQKWQW
KTEGDHKTFDAHVTVEHKKLFNQFLCACFPQNVKEIKNIGKRLLTAKCRTRSGETWTVKGTQQSGEVDTSISNTIINI
AILKELMFQLGIKGEVLANGDDFILFTNKPVDIDKSKAILKTMNMETEMHKSTRNIHTVEFCANKLAFSSTGQHVLFK
DIDRIYSKFGMTNVQVDYYRTYLMECAHGNWKMMKDTPIGQEFKRIYYYILYLEEQLTGQDQRQVQRQHMKLQYKYLE
KEYQRIIKENKDAKENTSTELTVSMMEAYDEALDLKKYTSKLINRIKNIYINYPYMGSIGLKYLAYNSIMTISHDTKQ
SERHKYTDTNELKQSIQPLLHQAFRTKNNRHIYRKIRRLTGLN"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "RNA directed RNA polymerase"
                    }
                  },
                  location int {
                    from 0,
                    to 558,
                    id gi 067065065076257461
                  }
                }
              }
            }
          }
        }
      },
      annot {
        {
          data ftable {
            {
              id local id 1,
              data cdregion {
                frame one,
                code {
                  id 1
                }
              },
              product whole gi 067065065076257451,
              location int {
                from 652,
                to 1653,
                strand plus,
                id gi 0670650651119641
              },
              xref {
                {
                  id local id 2
                },
                {
                  id local id 3
                }
              }
            },
            {
              id local id 4,
              data cdregion {
                frame one,
                code {
                  id 1
                }
              },
              product whole gi 067065065076257461,
              location int {
                from 1299,
                to 2978,
                strand plus,
                id gi 0670650651119641
              },
              xref {
                {
                  id local id 5
                },
                {
                  id local id 6
                }
              }
            }
          }
        }
      }
    }
  }
}