Viruses isolate Culex/LuandaLCM1/2019/virus Putative RNA dependent RNA polymerase (RdRp), Capsid protein alpha (capsid), and hypothetical protein no blastphit (ORF4) genes, complete cds.

---

Seq-submit ::= {
  sub {
    contact {
      contact {
        name name {
          last "Xia",
          first "Han",
          middle "",
          initials "",
          suffix "",
          title ""
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          country "China",
          street "NO.44 Xiaohongshan",
          email "hanxia@wh.iov.cn",
          postal-code "430071"
        }
      }
    },
    cit {
      authors {
        names std {
          {
            name name {
              last "Xia",
              first "Han",
              initials "H."
            }
          }
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          sub "Hubei",
          country "China",
          street "NO.44 Xiaohongshan",
          postal-code "430071"
        }
      },
      date std {
        year 2025,
        month 7,
        day 15
      }
    },
    subtype new,
    tool "table2asn 1.28.1094"
  },
  data entrys {
    set {
      class nuc-prot,
      descr {
        source {
          org {
            taxname "Viruses",
            orgname {
              mod {
                {
                  subtype isolate,
                  subname "Culex/LuandaLCM1/2019/virus"
                },
                {
                  subtype nat-host,
                  subname "Culex; Host_sex: Male"
                },
                {
                  subtype metagenome-source,
                  subname "mosquito metagenome"
                }
              },
              gcode 1
            }
          },
          subtype {
            {
              subtype country,
              name "Kenya: Luanda"
            },
            {
              subtype environmental-sample,
              name ""
            },
            {
              subtype collection-date,
              name "2019"
            },
            {
              subtype metagenomic,
              name ""
            }
          }
        },
        user {
          type str "StructuredComment",
          data {
            {
              label str "StructuredCommentPrefix",
              data str "##Assembly-Data-START##"
            },
            {
              label str "Assembly Method",
              data str "Megahit v. 1.2.9"
            },
            {
              label str "Sequencing Technology",
              data str "Illumina"
            },
            {
              label str "StructuredCommentSuffix",
              data str "##Assembly-Data-END##"
            }
          }
        },
        create-date std {
          year 2025,
          month 7,
          day 15
        }
      },
      seq-set {
        seq {
          id {
genbank { accession "C_AA111970", version 1}, gi 0670650651119701
          },
          descr {

        user {
            class "1.0",
            type str "AutodefOptions",
            data {
                {label str "UseLabels", data bool TRUE},
                {label str "LeaveParenthetical", data bool TRUE},
                {label str "SpecifyNuclearProduct", data bool TRUE},
                {label str "MaxMods", data int 0},
                {label str "FeatureListType", data str "List All Features"},
                {label str "MiscFeatRule", data str "Delete"},
                {label str "HIVRule", data str "WantBoth"},
                {label str "ModifierList",
                    data fields { {label str "OrgMods", num 1,
                            data strs {"isolate" }}}}}},
        
            molinfo {
              biomol genomic
            },
            user {
              type str "Submission",
              data {
                {
                  label str "AdditionalComment",
                  data str "GenBase"
                }
              }
            }
          },
          inst {
            repr raw,
            mol rna,
            length 4696,
            topology linear,
            strand ss,
            seq-data ncbi2na '55C0815FF7F877C00C804C746653A31F4055BCED098CA1C6
B6088F7206B7928B022108DEDBDFAA8AF90812708A811775EE032DF5555D82C29232CDA2FC2089
3576AC8B588A26889D8CB8AEFE2BAE3A208E5EFEE978E8E24283D77535E4A02052128A53BC2B41
2AEF6B0B79A8BD57687E684CBE2BBFAD582E7102003AEC47D2817A42AF409587024923B62021AE
5DDCC01CED229D8A259823AB7415257A143E8D2E8E59A85705707A56AB821233ED86570EA6A302
B86941D74969996C7A2010A88B93A248D743BA9F9533FB8092F0200407A18DEE8A0835E2F7D7BB
8AD081007858C40B8B89D175006215CEDDED5E44CF9BD7EFD8EFB5428F52885F80BFD1238E21F6
241973A7DD75101A2A78908EB65E8E66B9E1008A08B7BE71AA38E564C9EDF9B82A02CEACB215E1
FC048E8E9D8C8E80233227053E2E8F78845D6408D0A2DDA211597DEA3A0C940BFA0083A41E15D3
FEEBE3A054AECD9018D5B4E874E168317A0419EFE31AC036B28BBA045C7E8FE989B01A3A055FA1
8A36A4163FCE9C20E97AE3425A913A0D796E75582302149279E161440FDCA0548C2BBBE3EA2A11
38F4ED5C63548B48E77E239CB044828E15BD102B0B84415008815DCE028E2A8FB3345FEAFE20E1
6AE97594D443BED0407D79A234C78E40740C901A202178113457D287D071521D77A3F505022FF9
C77773DA97C2D62231AFA3923FD523FA2A5CFA485D0B6888290FA82027087A67E789AD210056A3
B5EC45162A222D457A861BDF8AE9A090882D5403953F12445C3B9B2E232566DBC4DB50453169C2
21D5456F78AFB510E774493EA283351EEA237402279EBBD1125DDFB229A64374693FF3A5A044A1
4A17B9D5EC5532515515517E4A2D9E30A8FA4822438C2363AA9DB54CA2109DD3277244A1207308
1E45E00AEC5C9528ED7EC94C56375C8950215233BCB6595D06555D1D97F1A28382EA2951555495
0A230154C0AE1DDCEFA360A221E80ABE48A628BB093007E60A5C4C90A74FFE27C1ABF15E8A0198
385187B805854091C0B9F27A96382E822BA091C0A85B19655D5BE05CFBBD81095505E826E8E362
C61FAC56169FF5735DE8ACE4BE5D628161A0B6EFE565D7B50824A28E0980910DE82EBA153D12A1
5D582148A2482B56DD26E0D22126520D893E05A648228555607855C140F7FC01DD0C03104D08E5
35202003B4127B339551869090F751589257D24930803AE4E62D70E21D95265D055820A5D820AD
E80E8A277F5D637A457662E544B9A07694F145DA9DE10AD7ADF453429D04B774F0893573D152A1
4F5187B50DD942DBD408347E9ADDC96D4ED2D542DD47D4D068A73BE4A4FB058D48E38113469768
DEDB41E4AB4405080EB142394D34A3957021A101FCC6D66A2089523DD755E81BDE8DEF782B0552
748DD12EBAE17D2BA1ED45C8A9D457228639C4DB7F6D7B5A4974124DA2903734EA330A5E6ADC41
6EB2086DDA970C5E554C220BD4A8747DF5AB941711AF8B14A0A2FA231E810D48E47FBA5CC21611
4207D47FD228E82F53C394907A42686E8414AE77BD63A46CFD0B116B4A80E4E42BA6D8692555AD
B45F54DE09A4746A003E385FB6680BA42DD8B4D7E080F6239DD90221D8E1762D483E3D4056803F
A073203E4DEC5D532FA22CFF3E00FFC01FF50D'H
          },
          annot {
            {
              data ftable {
                {
                  id local id 2,
                  data gene {
                    locus "RdRp"
                  },
                  location int {
                    from 54,
                    to 3326,
                    strand plus,
                    id gi 0670650651119701
                  },
                  xref {
                    {
                      id local id 1
                    }
                  }
                },
                {
                  id local id 3,
                  data rna {
                    type mRNA,
                    ext name "Putative RNA dependent RNA polymerase"
                  },
                  location int {
                    from 54,
                    to 3326,
                    strand plus,
                    id gi 0670650651119701
                  },
                  xref {
                    {
                      data gene {
                        locus "RdRp"
                      }
                    },
                    {
                      id local id 1
                    }
                  }
                },
                {
                  id local id 5,
                  data gene {
                    locus "capsid"
                  },
                  location int {
                    from 3367,
                    to 4629,
                    strand plus,
                    id gi 0670650651119701
                  },
                  xref {
                    {
                      id local id 4
                    }
                  }
                },
                {
                  id local id 6,
                  data rna {
                    type mRNA,
                    ext name "Capsid protein alpha"
                  },
                  location int {
                    from 3367,
                    to 4629,
                    strand plus,
                    id gi 0670650651119701
                  },
                  xref {
                    {
                      data gene {
                        locus "capsid"
                      }
                    },
                    {
                      id local id 4
                    }
                  }
                },
                {
                  id local id 8,
                  data gene {
                    locus "ORF4"
                  },
                  location int {
                    from 4431,
                    to 4682,
                    strand plus,
                    id gi 0670650651119701
                  },
                  xref {
                    {
                      id local id 7
                    }
                  }
                },
                {
                  id local id 9,
                  data rna {
                    type mRNA,
                    ext name "hypothetical protein no blastphit"
                  },
                  location int {
                    from 4431,
                    to 4682,
                    strand plus,
                    id gi 0670650651119701
                  },
                  xref {
                    {
                      data gene {
                        locus "ORF4"
                      }
                    },
                    {
                      id local id 7
                    }
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25753", version 1}, gi 067065065076257531
          },
          descr {
            title "MAG: Putative RNA dependent RNA polymerase [Viruses]",
            molinfo {
              biomol peptide,
              tech concept-trans
            }
          },
          inst {
            repr raw,
            mol aa,
            length 1090,
            seq-data iupacaa "MDTSNPVMSSDRTTVEEILERSAGVKRQDLSFLGEVARTAKREHLSCE
IVFPPLEVRQIVSEFKKSIPRVESERSGELDSEVFEVVMEKMPVCGLMDEQGIPLHPAGKNQTGGHVKVNRVFGKSAG
VPLGLADIVEVFGPEVLQRKMVYTSGTWQGFKARLKQQMSRKTVPLYKTMSEARGAAKMGLNPALDQLDQWMPRDPNP
NWPGVKTDIVDALMGGIKVTANSSAGAPYWRNKGECMEQILNVGLPIFVKAVKENKLDDLWRKNPEFFLCEVKNKTDR
YKVSELTSKTRPYVSVPAHIAFLVSMLSQGFQETLKVFTDDETSSNAYGFSSTNGGLSKMVAWMRGADKRGRVCCYGD
DARIAVLREGKVWVVDPDFKQMDGSIDGKDIELTIEWILRHLRKDQGVSETPAFWDGIAKVWKRMATDPHFVVDGTQV
YRKRSRHGLMTGIPGTTLFDTVKSVGVWNTYLDLASVNGWNPLDEDRATDFMAKNGLVIKPGTWNPAVLPEDKDQQLL
TDHKFLGTQIRCVDWEGHMIHVPTIPESDALEMLVTQKDDPFTKVSDTTQKRTLYERMRGLYITFGFENDRVASAIHN
VVNKLPAEIILMQTQIANGERPEHITLQDFNYPDSSGFPTKEFCYSLYSGLKSERYGWMQIFPDLEGLLADLKSERRQ
LGRKLRLALAERSDKTRDVLYTTEGESPPWDDVLEVAEAREVPKMPIYSTPNVRSEIARVVTSSNTIPAKRLPTRSEV
VHNALTALGGISTVGDLKRAAGVHTASLVEAAQSHGIFMAGTQDQDLCSLYPIATPTPTLQESLIRDWQKSNDKIDGG
SSHRRQALIALAQDRTIRTAPEKVYLAQDVLVAIPDLLEPKDPDMLVAALNAPLTRLYGGMKWEAHPPQPKEINPIKV
TLYVGSKERLERVAEARSVSIKLAKAYIARLIFELNGFTLEETRMTTTVKPTQSTKVLSWADEVEEVEALKGPYAAPP
VEPIVFEQAPNLEAWMIEYDLVPDRLFPILWRYAVASEEPTEVVFARLLSKKQEDEAKAQSGSGGPIHRDPPEDQRSR
RSRLSVNQRQRQNRALNRRRRGPPRTDP"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "Putative RNA dependent RNA polymerase"
                    }
                  },
                  location int {
                    from 0,
                    to 1089,
                    id gi 067065065076257531
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25754", version 1}, gi 067065065076257541
          },
          descr {
            title "MAG: Capsid protein alpha [Viruses]",
            molinfo {
              biomol peptide,
              tech concept-trans
            }
          },
          inst {
            repr raw,
            mol aa,
            length 420,
            seq-data iupacaa "MPSRKKNVNSCICPHDGKQFSTRAALQQHKKMVHASPNETRPAPQPRR
RPRRRSGNGGALSSDLAPSRVPTVRNSAITTSGSDKVLVFTIKAQQSLIKSIPIHPGTIPRLSNLAKSFQRITWRSLA
VHVSPQVSTSINGGYVAGIVTDPDDEHITASDLSSTAGSQTKKWYQDAIIRMPLKTDKLYTSAGEEPRFSSPGTFWIC
SEGNPSSDLTVVVTFRWTVHLEGSTLEDDATSSFVLSGSLNSIGGKSIMGYKACGSTTVVEDVSGLIPAPIREVPGTH
FFRVPTYTVEYQEGVGDTGTIQMHFVAYKTDTKNFHFSEDGSSINASNWQADVDNQVLCSDGTYFKYTGQGNACKVAS
TAAPRSSPSHLKRHSREKLMTLSRKVASLESSLKKFEMLSQRDSMTSSPELIPNPENLEL"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "Capsid protein alpha"
                    }
                  },
                  location int {
                    from 0,
                    to 419,
                    id gi 067065065076257541
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25755", version 1}, gi 067065065076257551
          },
          descr {
            title "MAG: hypothetical protein no blastphit [Viruses]",
            molinfo {
              biomol peptide,
              tech concept-trans
            }
          },
          inst {
            repr raw,
            mol aa,
            length 83,
            seq-data iupacaa "MQGGVDGSPPVVTFPSEAALTGKIDDLVAESGKSRVILEEIRDALAKR
LDDLESRIDSKPGKFGTIEIASVPPIVGEYFIENF"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "hypothetical protein no blastphit"
                    }
                  },
                  location int {
                    from 0,
                    to 82,
                    id gi 067065065076257551
                  }
                }
              }
            }
          }
        }
      },
      annot {
        {
          data ftable {
            {
              id local id 1,
              data cdregion {
                frame one,
                code {
                  id 1
                }
              },
              product whole gi 067065065076257531,
              location int {
                from 54,
                to 3326,
                strand plus,
                id gi 0670650651119701
              },
              xref {
                {
                  id local id 2
                },
                {
                  id local id 3
                }
              }
            },
            {
              id local id 4,
              data cdregion {
                frame one,
                code {
                  id 1
                }
              },
              product whole gi 067065065076257541,
              location int {
                from 3367,
                to 4629,
                strand plus,
                id gi 0670650651119701
              },
              xref {
                {
                  id local id 5
                },
                {
                  id local id 6
                }
              }
            },
            {
              id local id 7,
              data cdregion {
                frame one,
                code {
                  id 1
                }
              },
              product whole gi 067065065076257551,
              location int {
                from 4431,
                to 4682,
                strand plus,
                id gi 0670650651119701
              },
              xref {
                {
                  id local id 8
                },
                {
                  id local id 9
                }
              }
            }
          }
        }
      }
    }
  }
}