Riboviria isolate Culex/LuandaLCM3/2019/Hubei_virus:segment:1 Serine protease (serineprotease2) and RNA dependent RNA polymerase (RdRp) genes, complete cds.

---

Seq-submit ::= {
  sub {
    contact {
      contact {
        name name {
          last "Xia",
          first "Han",
          middle "",
          initials "",
          suffix "",
          title ""
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          country "China",
          street "NO.44 Xiaohongshan",
          email "hanxia@wh.iov.cn",
          postal-code "430071"
        }
      }
    },
    cit {
      authors {
        names std {
          {
            name name {
              last "Xia",
              first "Han",
              initials "H."
            }
          }
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          sub "Hubei",
          country "China",
          street "NO.44 Xiaohongshan",
          postal-code "430071"
        }
      },
      date std {
        year 2025,
        month 7,
        day 15
      }
    },
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  },
  data entrys {
    set {
      class nuc-prot,
      descr {
        source {
          org {
            taxname "Riboviria",
            orgname {
              mod {
                {
                  subtype isolate,
                  subname "Culex/LuandaLCM3/2019/Hubei_virus:segment:1"
                },
                {
                  subtype nat-host,
                  subname "Culex; Host_sex: Male"
                },
                {
                  subtype metagenome-source,
                  subname "mosquito metagenome"
                }
              },
              gcode 1
            }
          },
          subtype {
            {
              subtype country,
              name "Kenya: Luanda"
            },
            {
              subtype environmental-sample,
              name ""
            },
            {
              subtype collection-date,
              name "2019"
            },
            {
              subtype metagenomic,
              name ""
            }
          }
        },
        user {
          type str "StructuredComment",
          data {
            {
              label str "StructuredCommentPrefix",
              data str "##Assembly-Data-START##"
            },
            {
              label str "Assembly Method",
              data str "Megahit v. 1.2.9"
            },
            {
              label str "Sequencing Technology",
              data str "Illumina"
            },
            {
              label str "StructuredCommentSuffix",
              data str "##Assembly-Data-END##"
            }
          }
        },
        create-date std {
          year 2025,
          month 7,
          day 15
        }
      },
      seq-set {
        seq {
          id {
genbank { accession "C_AA111977", version 1}, gi 0670650651119771
          },
          descr {

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                {label str "HIVRule", data str "WantBoth"},
                {label str "ModifierList",
                    data fields { {label str "OrgMods", num 1,
                            data strs {"isolate" }}}}}},
        
            molinfo {
              biomol genomic
            },
            user {
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                {
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          inst {
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            length 3245,
            topology linear,
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482111118822182181841182182488281882182182428884148814411882118182888111411121
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'H
          },
          annot {
            {
              data ftable {
                {
                  id local id 2,
                  data gene {
                    locus "serineprotease2"
                  },
                  location int {
                    from 180,
                    to 2114,
                    strand plus,
                    id gi 0670650651119771
                  },
                  xref {
                    {
                      id local id 1
                    }
                  }
                },
                {
                  id local id 3,
                  data rna {
                    type mRNA,
                    ext name "Serine protease"
                  },
                  location int {
                    from 180,
                    to 2114,
                    strand plus,
                    id gi 0670650651119771
                  },
                  xref {
                    {
                      data gene {
                        locus "serineprotease2"
                      }
                    },
                    {
                      id local id 1
                    }
                  }
                },
                {
                  id local id 5,
                  data gene {
                    locus "RdRp"
                  },
                  location int {
                    from 2111,
                    to 3181,
                    strand plus,
                    id gi 0670650651119771
                  },
                  xref {
                    {
                      id local id 4
                    }
                  }
                },
                {
                  id local id 6,
                  data rna {
                    type mRNA,
                    ext name "RNA dependent RNA polymerase"
                  },
                  location int {
                    from 2111,
                    to 3181,
                    strand plus,
                    id gi 0670650651119771
                  },
                  xref {
                    {
                      data gene {
                        locus "RdRp"
                      }
                    },
                    {
                      id local id 4
                    }
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25770", version 1}, gi 067065065076257701
          },
          descr {
            title "MAG: Serine protease [Riboviria]",
            molinfo {
              biomol peptide,
              tech concept-trans
            }
          },
          inst {
            repr raw,
            mol aa,
            length 644,
            seq-data iupacaa "MMNRTMIHMMEFLTSELVLGLYVTLLLVLTLVAFNVINPCHKAMVMIS
FVTILVALVRSLAYLALGYIDLAFASFVARLGRFRYWNPFYSLKDPNYDLLIFYITVLIVIAMYFSRRQYNRRKHEYY
LLTQAGKFECEKAMPNSNYEIVPVLPSFQATVLVSLDGVKYAENGQCFWVDEGLLTSAHVIEGYEYCCIYRDEKHKVE
LKTSAFEVGQGDYACCRDPIQITQRLGLSKGKLSNVAIQKDSGLSVNVTAFGKRSIGFLNQHPQFGFVEYTGSTAKGF
SGAPYYFGRMIFGMHLGADSVNIGYDAAFLKSELRPSRVIKSLINLQQEDSASWLVEQLDRQDDVQYWQSPFDPSEFK
VRVGNMYHIVDGAVLDEIMSKRKIRKNAGKIDYLSESKXTETDPEPVLPSEEEVEIVDEEEEVPQEPPVTPQEPPVTP
GPSQPLIDVPTLNPANRYEDALISVLRGMMKEFGRTSVYTALRLEKEAVETLPEPLQPEVVKQPQAAKQPEVVKVDEL
PLAPRDAMTFNDSGNLLRAPAVDAGAPGKVCQQVPVQYQGQPIYPQMVFPYPPPLVNYHMESRSSMPVPQNVAFTRTQ
RNRNRRAARQQQKNELEQYRQRYGPMQNGGATSQQPPTPTLGSTESSTTQ"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "Serine protease"
                    }
                  },
                  location int {
                    from 0,
                    to 643,
                    id gi 067065065076257701
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25771", version 1}, gi 067065065076257711
          },
          descr {
            title "MAG: RNA dependent RNA polymerase [Riboviria]",
            molinfo {
              biomol peptide,
              tech concept-trans
            }
          },
          inst {
            repr raw,
            mol aa,
            length 356,
            seq-data iupacaa "MKEIDMKSTPGYCILTYYGSNNAQIFGWNGIACDPDRVSMVRQHVKLR
FDQLLAGNPISDDIKVFVKQEPHKLKKIQDGTYRLISAVSLIDTFIDRILFAWIARVQLDTVGKTPCLVGWSPVRGGW
RAIQNRFANSPVVCLDRSAWDWTVQGYLVDLWLQFLENLPVNPPKWWISVMKLRFKLLFEDVWFKFEDGTRVKQMTRG
VMKSGCYLTIILNSLSQSLLHYIANLRCGRPMAEKQPYSIGDDTVQEAFDWLEDYVKQLEMLGVTVKGAKVQNWVEFA
GFCFDGKTCYPAYWQKFLFNLSHTQRLGETLLSYQYLYVNEPVMYEFICRVARELGPQFVLPKLEALDIMNQPN"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "RNA dependent RNA polymerase"
                    }
                  },
                  location int {
                    from 0,
                    to 355,
                    id gi 067065065076257711
                  }
                }
              }
            }
          }
        }
      },
      annot {
        {
          data ftable {
            {
              id local id 1,
              data cdregion {
                frame one,
                code {
                  id 1
                }
              },
              product whole gi 067065065076257701,
              location int {
                from 180,
                to 2114,
                strand plus,
                id gi 0670650651119771
              },
              xref {
                {
                  id local id 2
                },
                {
                  id local id 3
                }
              }
            },
            {
              id local id 4,
              data cdregion {
                frame one,
                code {
                  id 1
                }
              },
              product whole gi 067065065076257711,
              location int {
                from 2111,
                to 3181,
                strand plus,
                id gi 0670650651119771
              },
              xref {
                {
                  id local id 5
                },
                {
                  id local id 6
                }
              }
            }
          }
        }
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    }
  }
}