Herelleviridae isolate Culex/MsambweniMCF1/2021/Staphylococcus_phage-2 Putative RNA ligase (ligase) gene, partial cds.

---

Seq-submit ::= {
  sub {
    contact {
      contact {
        name name {
          last "Xia",
          first "Han",
          middle "",
          initials "",
          suffix "",
          title ""
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          country "China",
          street "NO.44 Xiaohongshan",
          email "hanxia@wh.iov.cn",
          postal-code "430071"
        }
      }
    },
    cit {
      authors {
        names std {
          {
            name name {
              last "Xia",
              first "Han",
              initials "H."
            }
          }
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          sub "Hubei",
          country "China",
          street "NO.44 Xiaohongshan",
          postal-code "430071"
        }
      },
      date std {
        year 2025,
        month 7,
        day 15
      }
    },
    subtype new,
    tool "table2asn 1.28.1094"
  },
  data entrys {
    set {
      class nuc-prot,
      descr {
        source {
          org {
            taxname "Herelleviridae",
            orgname {
              mod {
                {
                  subtype isolate,
                  subname "Culex/MsambweniMCF1/2021/Staphylococcus_phage-2"
                },
                {
                  subtype nat-host,
                  subname "Culex; Host_sex: Female"
                },
                {
                  subtype metagenome-source,
                  subname "mosquito metagenome"
                }
              },
              gcode 11
            }
          },
          subtype {
            {
              subtype country,
              name "Kenya: Msambweni"
            },
            {
              subtype environmental-sample,
              name ""
            },
            {
              subtype collection-date,
              name "2021"
            },
            {
              subtype metagenomic,
              name ""
            }
          }
        },
        user {
          type str "StructuredComment",
          data {
            {
              label str "StructuredCommentPrefix",
              data str "##Assembly-Data-START##"
            },
            {
              label str "Assembly Method",
              data str "Megahit v. 1.2.9"
            },
            {
              label str "Sequencing Technology",
              data str "Illumina"
            },
            {
              label str "StructuredCommentSuffix",
              data str "##Assembly-Data-END##"
            }
          }
        },
        create-date std {
          year 2025,
          month 7,
          day 15
        }
      },
      seq-set {
        seq {
          id {
genbank { accession "C_AA111995", version 1}, gi 0670650651119951
          },
          descr {

        user {
            class "1.0",
            type str "AutodefOptions",
            data {
                {label str "UseLabels", data bool TRUE},
                {label str "LeaveParenthetical", data bool TRUE},
                {label str "SpecifyNuclearProduct", data bool TRUE},
                {label str "MaxMods", data int 0},
                {label str "FeatureListType", data str "List All Features"},
                {label str "MiscFeatRule", data str "Delete"},
                {label str "HIVRule", data str "WantBoth"},
                {label str "ModifierList",
                    data fields { {label str "OrgMods", num 1,
                            data strs {"isolate" }}}}}},
        
            molinfo {
              biomol genomic
            },
            user {
              type str "Submission",
              data {
                {
                  label str "AdditionalComment",
                  data str "GenBase"
                }
              }
            }
          },
          inst {
            repr raw,
            mol rna,
            length 875,
            topology linear,
            strand ss,
            seq-data ncbi4na '811148811144811144118848188141811488811441214144
188148848821141411188141844214211842814888812148141111844141188121484888282824
8141111114881112411111411121881112448882818448FFFFFFFFFFFFF1818121141441848188
841888828841141881818818188844141184488148211121811418821181211141141184881811
141188881848288841848181841811141141141142181828122888111111218421844118842842
281888141488111412148811112188188118842841422182221821888111218888112822821141
818821141888148144811182841818412148811122841812144141144818848818811181828841
844111182241121841141281881811418848182411241488811441188811814121411118411412
141118811111811841882848142141881842818412814142114118441111118418888214142818
841441141814488111141141141888141128121111288814882148818411141148144421411288
848841841218818441141141111141811818418811418818841111121418811411111418422121
818488114141118228841141111441844141418818141840'H
          },
          annot {
            {
              data ftable {
                {
                  id local id 2,
                  data gene {
                    locus "ligase"
                  },
                  partial TRUE,
                  location int {
                    from 0,
                    to 874,
                    strand plus,
                    id gi 0670650651119951,
                    fuzz-from lim lt,
                    fuzz-to lim gt
                  },
                  xref {
                    {
                      id local id 1
                    }
                  }
                },
                {
                  id local id 3,
                  data rna {
                    type mRNA,
                    ext name "Putative RNA ligase"
                  },
                  partial TRUE,
                  location int {
                    from 0,
                    to 874,
                    strand plus,
                    id gi 0670650651119951,
                    fuzz-from lim lt,
                    fuzz-to lim gt
                  },
                  xref {
                    {
                      data gene {
                        locus "ligase"
                      }
                    },
                    {
                      id local id 1
                    }
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25807", version 1}, gi 067065065076258071
          },
          descr {
            title "MAG: Putative RNA ligase, partial [Herelleviridae]",
            molinfo {
              biomol peptide,
              tech concept-trans,
              completeness no-ends
            }
          },
          inst {
            repr raw,
            mol aa,
            length 291,
            seq-data iupacaa "KVKGKGIVLDKFKDRGLVVQEKLDGSNASFTVENGELQCFSRRKKLNE
KETLNGFYGXXXXXIQEDVFDFLEDYIIFGEWLVKHKIQYKEECYKEFYVFDVYDKEEEAYLPLKNMHGIAAYLELKT
VKTLLIAEPSHHLNILTPQDIQDLVGKSDMTVKPDTGEGIVIKYLDGKSEHEDYYKIVSNEFKEFNRQKMKTEIKNND
SVADYAMTRARMEKMIFRAIEEDRLKEEDLELQNFSSVMKEVGQNFVDDIMEEEKDNMIKIIEKQIKKKMPHMLREIL
EEKDGEIID"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "Putative RNA ligase"
                    }
                  },
                  partial TRUE,
                  location int {
                    from 0,
                    to 290,
                    id gi 067065065076258071,
                    fuzz-from lim lt,
                    fuzz-to lim gt
                  }
                }
              }
            }
          }
        }
      },
      annot {
        {
          data ftable {
            {
              id local id 1,
              data cdregion {
                frame two,
                code {
                  id 11
                }
              },
              partial TRUE,
              product whole gi 067065065076258071,
              location int {
                from 0,
                to 874,
                strand plus,
                id gi 0670650651119951,
                fuzz-from lim lt,
                fuzz-to lim gt
              },
              xref {
                {
                  id local id 2
                },
                {
                  id local id 3
                }
              }
            }
          }
        }
      }
    }
  }
}