Herelleviridae isolate Culex/MsambweniMCF4/2021/Staphylococcus_phage-2 Putative RNA ligase (ligase) gene, partial cds.

---

Seq-submit ::= {
  sub {
    contact {
      contact {
        name name {
          last "Xia",
          first "Han",
          middle "",
          initials "",
          suffix "",
          title ""
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          country "China",
          street "NO.44 Xiaohongshan",
          email "hanxia@wh.iov.cn",
          postal-code "430071"
        }
      }
    },
    cit {
      authors {
        names std {
          {
            name name {
              last "Xia",
              first "Han",
              initials "H."
            }
          }
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          sub "Hubei",
          country "China",
          street "NO.44 Xiaohongshan",
          postal-code "430071"
        }
      },
      date std {
        year 2025,
        month 7,
        day 15
      }
    },
    subtype new,
    tool "table2asn 1.28.1094"
  },
  data entrys {
    set {
      class nuc-prot,
      descr {
        source {
          org {
            taxname "Herelleviridae",
            orgname {
              mod {
                {
                  subtype isolate,
                  subname "Culex/MsambweniMCF4/2021/Staphylococcus_phage-2"
                },
                {
                  subtype nat-host,
                  subname "Culex; Host_sex: Female"
                },
                {
                  subtype metagenome-source,
                  subname "mosquito metagenome"
                }
              },
              gcode 11
            }
          },
          subtype {
            {
              subtype country,
              name "Kenya: Msambweni"
            },
            {
              subtype environmental-sample,
              name ""
            },
            {
              subtype collection-date,
              name "2021"
            },
            {
              subtype metagenomic,
              name ""
            }
          }
        },
        user {
          type str "StructuredComment",
          data {
            {
              label str "StructuredCommentPrefix",
              data str "##Assembly-Data-START##"
            },
            {
              label str "Assembly Method",
              data str "Megahit v. 1.2.9"
            },
            {
              label str "Sequencing Technology",
              data str "Illumina"
            },
            {
              label str "StructuredCommentSuffix",
              data str "##Assembly-Data-END##"
            }
          }
        },
        create-date std {
          year 2025,
          month 7,
          day 15
        }
      },
      seq-set {
        seq {
          id {
genbank { accession "C_AA112005", version 1}, gi 0670650651120051
          },
          descr {

        user {
            class "1.0",
            type str "AutodefOptions",
            data {
                {label str "UseLabels", data bool TRUE},
                {label str "LeaveParenthetical", data bool TRUE},
                {label str "SpecifyNuclearProduct", data bool TRUE},
                {label str "MaxMods", data int 0},
                {label str "FeatureListType", data str "List All Features"},
                {label str "MiscFeatRule", data str "Delete"},
                {label str "HIVRule", data str "WantBoth"},
                {label str "ModifierList",
                    data fields { {label str "OrgMods", num 1,
                            data strs {"isolate" }}}}}},
        
            molinfo {
              biomol genomic
            },
            user {
              type str "Submission",
              data {
                {
                  label str "AdditionalComment",
                  data str "GenBase"
                }
              }
            }
          },
          inst {
            repr raw,
            mol rna,
            length 857,
            topology linear,
            strand ss,
            seq-data ncbi2na 'C0B80ACCA0FB3C8C2FC2848A3CBEF42203C8E92439CBFC4B
200E883C4BBF776C8002F01800804F01AFDCEBEAE4E00CC4228ECFE3FDF823CCF33FA20EBCB404
C23D0C40820EF3020FF3B7F8ECCE3020820933717F0004E4E83E7973F22F0212F004F3C3E7894D
534FC04FF075D08CF423F2CAC0DE3384BC05E312882B3EF3C0CDF8E8035813821CF308FB36062F
C283F0C84803821203C00C38F7B248F39CE1C89083A000E3FD2273E28232BC020823F2071007F2
F4BCE020B2A481FEF8E13CE8208008C338F08F3E00123C20023944CEF0880D7E080280'H
          },
          annot {
            {
              data ftable {
                {
                  id local id 2,
                  data gene {
                    locus "ligase"
                  },
                  partial TRUE,
                  location int {
                    from 0,
                    to 856,
                    strand plus,
                    id gi 0670650651120051,
                    fuzz-from lim lt,
                    fuzz-to lim gt
                  },
                  xref {
                    {
                      id local id 1
                    }
                  }
                },
                {
                  id local id 3,
                  data rna {
                    type mRNA,
                    ext name "Putative RNA ligase"
                  },
                  partial TRUE,
                  location int {
                    from 0,
                    to 856,
                    strand plus,
                    id gi 0670650651120051,
                    fuzz-from lim lt,
                    fuzz-to lim gt
                  },
                  xref {
                    {
                      data gene {
                        locus "ligase"
                      }
                    },
                    {
                      id local id 1
                    }
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25824", version 1}, gi 067065065076258241
          },
          descr {
            title "MAG: Putative RNA ligase, partial [Herelleviridae]",
            molinfo {
              biomol peptide,
              tech concept-trans,
              completeness no-ends
            }
          },
          inst {
            repr raw,
            mol aa,
            length 285,
            seq-data iupacaa "KVKGIGIVLDKFKDRGLVVQEKLDGSNASFTVENGELQCFSRRKKLNE
KETLNGFYGWVHENIQEDVFDFLEDYIIFGEWLVKHKIQYKEECYKEFYVFDVYDKEEEAYLPLKNMHGIAAYLELKT
VKTLLIAEPSHHLNILTPQDIQDLVGKSDMTVKPDTGEGIVIKYLDGKSEHEDYYKIVSNEFKEFNRQKMKTEIKNND
SVADYAMTRARMEKMIFRAIEEDRLKEEDLELQNFSSVMKEVGQNFVDDIMEEEKDNMIKIIEKQIKKKMPHMLREIL
EEK"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "Putative RNA ligase"
                    }
                  },
                  partial TRUE,
                  location int {
                    from 0,
                    to 284,
                    id gi 067065065076258241,
                    fuzz-from lim lt,
                    fuzz-to lim gt
                  }
                }
              }
            }
          }
        }
      },
      annot {
        {
          data ftable {
            {
              id local id 1,
              data cdregion {
                frame two,
                code {
                  id 11
                }
              },
              partial TRUE,
              product whole gi 067065065076258241,
              location int {
                from 0,
                to 856,
                strand plus,
                id gi 0670650651120051,
                fuzz-from lim lt,
                fuzz-to lim gt
              },
              xref {
                {
                  id local id 2
                },
                {
                  id local id 3
                }
              }
            }
          }
        }
      }
    }
  }
}