Partitiviridae isolate Culex/MsambweniMCF4/2021/partiti-like_virus:segment:1 RNA dependent RNA polymerase (RdRp) gene, partial cds.

---

Seq-submit ::= {
  sub {
    contact {
      contact {
        name name {
          last "Xia",
          first "Han",
          middle "",
          initials "",
          suffix "",
          title ""
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          country "China",
          street "NO.44 Xiaohongshan",
          email "hanxia@wh.iov.cn",
          postal-code "430071"
        }
      }
    },
    cit {
      authors {
        names std {
          {
            name name {
              last "Xia",
              first "Han",
              initials "H."
            }
          }
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          sub "Hubei",
          country "China",
          street "NO.44 Xiaohongshan",
          postal-code "430071"
        }
      },
      date std {
        year 2025,
        month 7,
        day 15
      }
    },
    subtype new,
    tool "table2asn 1.28.1094"
  },
  data entrys {
    set {
      class nuc-prot,
      descr {
        source {
          org {
            taxname "Partitiviridae",
            orgname {
              mod {
                {
                  subtype isolate,
                  subname "Culex/MsambweniMCF4/2021/partiti-like_virus:segment
:1"
                },
                {
                  subtype nat-host,
                  subname "Culex; Host_sex: Female"
                },
                {
                  subtype metagenome-source,
                  subname "mosquito metagenome"
                }
              },
              gcode 1
            }
          },
          subtype {
            {
              subtype country,
              name "Kenya: Msambweni"
            },
            {
              subtype environmental-sample,
              name ""
            },
            {
              subtype collection-date,
              name "2021"
            },
            {
              subtype metagenomic,
              name ""
            }
          }
        },
        user {
          type str "StructuredComment",
          data {
            {
              label str "StructuredCommentPrefix",
              data str "##Assembly-Data-START##"
            },
            {
              label str "Assembly Method",
              data str "Megahit v. 1.2.9"
            },
            {
              label str "Sequencing Technology",
              data str "Illumina"
            },
            {
              label str "StructuredCommentSuffix",
              data str "##Assembly-Data-END##"
            }
          }
        },
        create-date std {
          year 2025,
          month 7,
          day 15
        }
      },
      seq-set {
        seq {
          id {
genbank { accession "C_AA112008", version 1}, gi 0670650651120081
          },
          descr {

        user {
            class "1.0",
            type str "AutodefOptions",
            data {
                {label str "UseLabels", data bool TRUE},
                {label str "LeaveParenthetical", data bool TRUE},
                {label str "SpecifyNuclearProduct", data bool TRUE},
                {label str "MaxMods", data int 0},
                {label str "FeatureListType", data str "List All Features"},
                {label str "MiscFeatRule", data str "Delete"},
                {label str "HIVRule", data str "WantBoth"},
                {label str "ModifierList",
                    data fields { {label str "OrgMods", num 1,
                            data strs {"isolate" }}}}}},
        
            molinfo {
              biomol genomic
            },
            user {
              type str "Submission",
              data {
                {
                  label str "AdditionalComment",
                  data str "GenBase"
                }
              }
            }
          },
          inst {
            repr raw,
            mol rna,
            length 1632,
            topology linear,
            strand ss,
            seq-data ncbi4na '224221122481888111841488124144281148181841111222
882228241444144418122214884122811411144224481224182441884224114228821211441112
128884484121114814814184184841214411148882121444241228811218214284141841124124
128881841148884182482482124882211841811112114122284848128888221822822141212822
4841141488148122841411411418118222288212212F4484414248444214242214118822211144
121111482284488812288182484112814418121141211114444114822884122181141481182411
124111821844221248448124214814414214481124812122188812214121241841888828122414
212141828481111214184281121111822484214848884488122212811284888881484144144842
488444848182212821842488182841141248481211124188822281814248124422814111844241
184484411842148181821184111848481182488212222284418211228124841821124188182421
848884181141224882212228442821812414184218828281888814214128488824181844482484
82411142821418448881181844411488418424414114142884F812428881112421841842428128
821811181282284881418841181484484141418821841112144424481882228214488284488441
2811218248244214218128111242418218812F1418184284888121121211284418222812228824
2241218881218444241841282288248848F4884114412284881122824114188814211214814884
1141111888244448418188411812141811414884448412212182F8284881124882128882824448
188121182884124484824248881112282114181281881884248228821818122284141411142244
124124882141281288484282484482844412148848448218248844411481411484282111148448
844118844822114181881844111212121421888248222148441884114128182822121418122211
182418821418888841141228814428811182284824148814442822244142281488841844444884
881221884814112228222211824242881442148821148241448121411188841118182848188212
428121124114112282812212'H
          },
          annot {
            {
              data ftable {
                {
                  id local id 2,
                  data gene {
                    locus "RdRp"
                  },
                  partial TRUE,
                  location int {
                    from 17,
                    to 1631,
                    strand plus,
                    id gi 0670650651120081,
                    fuzz-to lim gt
                  },
                  xref {
                    {
                      id local id 1
                    }
                  }
                },
                {
                  id local id 3,
                  data rna {
                    type mRNA,
                    ext name "RNA dependent RNA polymerase"
                  },
                  partial TRUE,
                  location int {
                    from 17,
                    to 1631,
                    strand plus,
                    id gi 0670650651120081,
                    fuzz-to lim gt
                  },
                  xref {
                    {
                      data gene {
                        locus "RdRp"
                      }
                    },
                    {
                      id local id 1
                    }
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25829", version 1}, gi 067065065076258291
          },
          descr {
            title "MAG: RNA dependent RNA polymerase, partial [Partitiviridae]",
            molinfo {
              biomol peptide,
              tech concept-trans,
              completeness no-right
            }
          },
          inst {
            repr raw,
            mol aa,
            length 538,
            seq-data iupacaa "MSYEAKYMKTLPSREGYPVDLRKAGTDRIAEAFTRKHFGDKVVDDVTG
KFHRATLTSAEMNDDFMKFDRRHVPMIKQDPVYFSILQTLREELVPEKKIIPFTTGGAWAAPEFPKDKSPGLPYRELG
YKTKGEVLDHKSNRNEIMATWYAVGAGNVHHLPDTMIFYRAQICKTDANKIRAVFGYPLTVFSEEVRWVYPLMRYLKT
CTNDFPIAYGLEMANGGMQYINEMCNRSPPGSTYVINDYRMFDKTVPPWLIRDAFSILADCFDMGRVESSDGLIWEVD
AEKSLXRFKRMMRYFINTPVRLNSGERFMKQGGIPSGSGWTNIVGSILNAIITRYAVYNTTGSLPFADIYMGDDSFVV
VEGPVNLEDLATVVEENFGVILNTDKSWVTTSSVNVHFLGYYNLDGVAFKPQDTIIASFIYPERKPDDVQTTCARGLG
QLWSSLGSRSAQKWLELVQDIMETHSISSQWIEDYLHRYPNRFRFLKTLGLNPVELGLPEPSLMGVVTIVEPSPIALR
QFKSRYRNLKYLYSRYNEEPLP"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "RNA dependent RNA polymerase"
                    }
                  },
                  partial TRUE,
                  location int {
                    from 0,
                    to 537,
                    id gi 067065065076258291,
                    fuzz-to lim gt
                  }
                }
              }
            }
          }
        }
      },
      annot {
        {
          data ftable {
            {
              id local id 1,
              data cdregion {
                frame one,
                code {
                  id 1
                }
              },
              partial TRUE,
              product whole gi 067065065076258291,
              location int {
                from 17,
                to 1631,
                strand plus,
                id gi 0670650651120081,
                fuzz-to lim gt
              },
              xref {
                {
                  id local id 2
                },
                {
                  id local id 3
                }
              }
            }
          }
        }
      }
    }
  }
}