Partitiviridae isolate Culex/MsambweniMCF4/2021/partiti-like_virus-3:segment:2 hypothetical protein no blastphit (ORF1) and ORF (ORF12) genes, complete cds.
Seq-submit ::= {
sub {
contact {
contact {
name name {
last "Xia",
first "Han",
middle "",
initials "",
suffix "",
title ""
},
affil std {
affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
div "Microbial Resource and Bioinformatic Center",
city "Wuhan",
country "China",
street "NO.44 Xiaohongshan",
email "hanxia@wh.iov.cn",
postal-code "430071"
}
}
},
cit {
authors {
names std {
{
name name {
last "Xia",
first "Han",
initials "H."
}
}
},
affil std {
affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
div "Microbial Resource and Bioinformatic Center",
city "Wuhan",
sub "Hubei",
country "China",
street "NO.44 Xiaohongshan",
postal-code "430071"
}
},
date std {
year 2025,
month 7,
day 15
}
},
subtype new,
tool "table2asn 1.28.1094"
},
data entrys {
set {
class nuc-prot,
descr {
source {
org {
taxname "Partitiviridae",
orgname {
mod {
{
subtype isolate,
subname "Culex/MsambweniMCF4/2021/partiti-like_virus-3:segme
nt:2"
},
{
subtype nat-host,
subname "Culex; Host_sex: Female"
},
{
subtype metagenome-source,
subname "mosquito metagenome"
}
},
gcode 1
}
},
subtype {
{
subtype country,
name "Kenya: Msambweni"
},
{
subtype environmental-sample,
name ""
},
{
subtype collection-date,
name "2021"
},
{
subtype metagenomic,
name ""
}
}
},
user {
type str "StructuredComment",
data {
{
label str "StructuredCommentPrefix",
data str "##Assembly-Data-START##"
},
{
label str "Assembly Method",
data str "Megahit v. 1.2.9"
},
{
label str "Sequencing Technology",
data str "Illumina"
},
{
label str "StructuredCommentSuffix",
data str "##Assembly-Data-END##"
}
}
},
create-date std {
year 2025,
month 7,
day 15
}
},
seq-set {
seq {
id {
genbank { accession "C_AA112010", version 1}, gi 0670650651120101
},
descr {
user {
class "1.0",
type str "AutodefOptions",
data {
{label str "UseLabels", data bool TRUE},
{label str "LeaveParenthetical", data bool TRUE},
{label str "SpecifyNuclearProduct", data bool TRUE},
{label str "MaxMods", data int 0},
{label str "FeatureListType", data str "List All Features"},
{label str "MiscFeatRule", data str "Delete"},
{label str "HIVRule", data str "WantBoth"},
{label str "ModifierList",
data fields { {label str "OrgMods", num 1,
data strs {"isolate" }}}}}},
molinfo {
biomol genomic
},
user {
type str "Submission",
data {
{
label str "AdditionalComment",
data str "GenBase"
}
}
}
},
inst {
repr raw,
mol rna,
length 1430,
topology linear,
strand ss,
seq-data ncbi4na '288188111111488881111144882111444218842288284814
441121481118822218124848141111481812221828812812128148284241881821118824448111
821112818882428114141888811142884188281411821188228441414442228112444811181288
114828811288282841888148884224121282444481482214422884111281122188821142248884
1112481424414281288821144821882441182F1884118481218211884812212224241112128421
242811421188118884241112882841218821218841821482282488284488418818818242228248
188488112814482818148821828281821421848224411122421418882442221141118222128228
224224881212442114112841424411841141841114842284141182212284114841228122112218
441122144281281884884121188881121181114884818481244822121422811281442141888444
182118844122281182182184448881112218484124144121181241141484118822481812841821
111882141221822484248444218814244441141841814282888284884114188822884882281121
144181144224224844182148848484441814824121244481124281182181F82214282884488181
418812221814222182111184284812122424188211144184148884488812112182888882111882
118424184482214281818428121814421818818442418884124412248211112812241218881181
418424824142111844841414121881418881281481281121211181411144812128218814184112
412841141114841184112148814184182811884121112112288281811881484112828221184141
822211884414224214284811228884214281144181281814814182818888284112881144222821
411211282828282284288281488884128884824224188224118112881818181182481428211411
12218182221128824811148882114148418818181884122184212112'H
},
annot {
{
data ftable {
{
id local id 2,
data gene {
locus "ORF1"
},
location int {
from 325,
to 564,
strand plus,
id gi 0670650651120101
},
xref {
{
id local id 1
}
}
},
{
id local id 3,
data rna {
type mRNA,
ext name "hypothetical protein no blastphit"
},
location int {
from 325,
to 564,
strand plus,
id gi 0670650651120101
},
xref {
{
data gene {
locus "ORF1"
}
},
{
id local id 1
}
}
},
{
id local id 5,
data gene {
locus "ORF12"
},
location int {
from 473,
to 1348,
strand plus,
id gi 0670650651120101
},
xref {
{
id local id 4
}
}
},
{
id local id 6,
data rna {
type mRNA,
ext name "ORF"
},
location int {
from 473,
to 1348,
strand plus,
id gi 0670650651120101
},
xref {
{
data gene {
locus "ORF12"
}
},
{
id local id 4
}
}
}
}
}
}
},
seq {
id {
genbank { accession "C_AAL25831", version 1}, gi 067065065076258311
},
descr {
title "MAG: hypothetical protein no blastphit [Partitiviridae]",
molinfo {
biomol peptide,
tech concept-trans
}
},
inst {
repr raw,
mol aa,
length 79,
seq-data iupacaa "MYINCTTRETLHAKQLICETSDIHIDQSSFWLIIIALVLLTRSIVHLY
QHVRKPQISAQEIPLLRRYTARTERNEDESA"
},
annot {
{
data ftable {
{
data prot {
name {
"hypothetical protein no blastphit"
}
},
location int {
from 0,
to 78,
id gi 067065065076258311
}
}
}
}
}
},
seq {
id {
genbank { accession "C_AAL25832", version 1}, gi 067065065076258321
},
descr {
title "MAG: ORF [Partitiviridae]",
molinfo {
biomol peptide,
tech concept-trans
}
},
inst {
repr raw,
mol aa,
length 291,
seq-data iupacaa "MSGNRRFRPKKSHSSAVTRQELSGMKMKVPENPPEVTYQPWNQATIVD
NFNNKVVCTVHSLTRQIWDQLDPNHHGFKPCDEDNTKSEFRILIKIQTIRAWALAGKMIALSVEDFLVPNKDKAAVDQ
LCGIVDTGNANHXPALGYRLPIAHQNAVHRDSKDEFGLQHLFQIQCDGPAICYIGILWRFDGPSKLPTFNRCVEQMVR
DIRFTSTNTNRKVHSLDERLKKVNEQLDDLIDKQPSIISELSNEIPIGAAAVTFAAKDTIVDLFSELKALRTTLSPAS
SFDFVADSE"
},
annot {
{
data ftable {
{
data prot {
name {
"ORF"
}
},
location int {
from 0,
to 290,
id gi 067065065076258321
}
}
}
}
}
}
},
annot {
{
data ftable {
{
id local id 1,
data cdregion {
frame one,
code {
id 1
}
},
product whole gi 067065065076258311,
location int {
from 325,
to 564,
strand plus,
id gi 0670650651120101
},
xref {
{
id local id 2
},
{
id local id 3
}
}
},
{
id local id 4,
data cdregion {
frame one,
code {
id 1
}
},
product whole gi 067065065076258321,
location int {
from 473,
to 1348,
strand plus,
id gi 0670650651120101
},
xref {
{
id local id 5
},
{
id local id 6
}
}
}
}
}
}
}
}
}