Partitiviridae isolate Aedes/UkundaUAF2/2021/partiti-like_virus-2:segment:2 Putative capsid protein (capsid) gene, partial cds.

---

Seq-submit ::= {
  sub {
    contact {
      contact {
        name name {
          last "Xia",
          first "Han",
          middle "",
          initials "",
          suffix "",
          title ""
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          country "China",
          street "NO.44 Xiaohongshan",
          email "hanxia@wh.iov.cn",
          postal-code "430071"
        }
      }
    },
    cit {
      authors {
        names std {
          {
            name name {
              last "Xia",
              first "Han",
              initials "H."
            }
          }
        },
        affil std {
          affil "Wuhan Institute of Virology, Chinese Academy of Sciences",
          div "Microbial Resource and Bioinformatic Center",
          city "Wuhan",
          sub "Hubei",
          country "China",
          street "NO.44 Xiaohongshan",
          postal-code "430071"
        }
      },
      date std {
        year 2025,
        month 7,
        day 15
      }
    },
    subtype new,
    tool "table2asn 1.28.1094"
  },
  data entrys {
    set {
      class nuc-prot,
      descr {
        source {
          org {
            taxname "Partitiviridae",
            orgname {
              mod {
                {
                  subtype isolate,
                  subname "Aedes/UkundaUAF2/2021/partiti-like_virus-2:segment:2"
                },
                {
                  subtype nat-host,
                  subname "Aedes; Host_sex: Female"
                },
                {
                  subtype metagenome-source,
                  subname "mosquito metagenome"
                }
              },
              gcode 1
            }
          },
          subtype {
            {
              subtype country,
              name "Kenya: Ukunda"
            },
            {
              subtype environmental-sample,
              name ""
            },
            {
              subtype collection-date,
              name "2021"
            },
            {
              subtype metagenomic,
              name ""
            }
          }
        },
        user {
          type str "StructuredComment",
          data {
            {
              label str "StructuredCommentPrefix",
              data str "##Assembly-Data-START##"
            },
            {
              label str "Assembly Method",
              data str "Megahit v. 1.2.9"
            },
            {
              label str "Sequencing Technology",
              data str "Illumina"
            },
            {
              label str "StructuredCommentSuffix",
              data str "##Assembly-Data-END##"
            }
          }
        },
        create-date std {
          year 2025,
          month 7,
          day 15
        }
      },
      seq-set {
        seq {
          id {
genbank { accession "C_AA112019", version 1}, gi 0670650651120191
          },
          descr {

        user {
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            type str "AutodefOptions",
            data {
                {label str "UseLabels", data bool TRUE},
                {label str "LeaveParenthetical", data bool TRUE},
                {label str "SpecifyNuclearProduct", data bool TRUE},
                {label str "MaxMods", data int 0},
                {label str "FeatureListType", data str "List All Features"},
                {label str "MiscFeatRule", data str "Delete"},
                {label str "HIVRule", data str "WantBoth"},
                {label str "ModifierList",
                    data fields { {label str "OrgMods", num 1,
                            data strs {"isolate" }}}}}},
        
            molinfo {
              biomol genomic
            },
            user {
              type str "Submission",
              data {
                {
                  label str "AdditionalComment",
                  data str "GenBase"
                }
              }
            }
          },
          inst {
            repr raw,
            mol rna,
            length 1290,
            topology linear,
            strand ss,
            seq-data ncbi4na '824811122141148441844441422441888882822111111828
182212814888212212422811411241222284241818141242888214248842141288182442488444
188228211124848122441488124488111881282244181888241828218241182218281224441218
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414188481288248814142121821111241418122828412442181818841888811182111218422212
144118884218822811442418242248481228882142418244122848214141822111282414111184
421848114248222841118841241242842848211844848142144188888244142818212841842112
421221818881844814212422182122144148142842481882848128281241142842111822122244
148841418484424128822448144118112122442242141228121842828221122812424142888128
244481248422114F12248222418112821141418214111818281812241128844118241142448881
241844841218821141888411841818842188844424411288811244418822288284818241128128
214121248482412411148242144482811118422882418218244122218841414841148244882221
182421118844181248448242811241841221418422224111282124822412421144118848482112
814482281812221488448842428224242212142848842818288811422824148141181842811818
122824111881218281214188841414141248248222822842884448842112428411212121488211
881844824422141184418211888141812188844188114841148841844114442248448214841181
848844111218111882124824881418442888284141428222284114411112111448111222'H
          },
          annot {
            {
              data ftable {
                {
                  id local id 2,
                  data gene {
                    locus "capsid"
                  },
                  partial TRUE,
                  location int {
                    from 0,
                    to 1245,
                    strand plus,
                    id gi 0670650651120191,
                    fuzz-from lim lt
                  },
                  xref {
                    {
                      id local id 1
                    }
                  }
                },
                {
                  id local id 3,
                  data rna {
                    type mRNA,
                    ext name "Putative capsid protein"
                  },
                  partial TRUE,
                  location int {
                    from 0,
                    to 1245,
                    strand plus,
                    id gi 0670650651120191,
                    fuzz-from lim lt
                  },
                  xref {
                    {
                      data gene {
                        locus "capsid"
                      }
                    },
                    {
                      id local id 1
                    }
                  }
                }
              }
            }
          }
        },
        seq {
          id {
genbank { accession "C_AAL25845", version 1}, gi 067065065076258451
          },
          descr {
            title "MAG: Putative capsid protein, partial [Partitiviridae]",
            molinfo {
              biomol peptide,
              tech concept-trans,
              completeness no-left
            }
          },
          inst {
            repr raw,
            mol aa,
            length 414,
            seq-data iupacaa "RKPEVDGEPDFSPKNLSTSFTTPKNDPCDIDAFSVADLSALGFLKRVP
ELRLNYSGYFDLIESIYRDMMSQDRYWIRGVTEAMWTYYCTMLLWERLYFVRAHQNEIPLTAYIDFKSNMPTGICIPK
AIAVYLSAIGPVRDPNSRKWHVSVPEIDDAAVNGVAGFFGAITDATHHIYGSTPSPGVAAYSVLYEAANPPGVEMWRL
PVGITPAADLHALQPTRALLGYVPXTVPITQEIRNIYTELGIEAVYDGDIQDLNDIAFGRNFNGIPFCIELLRHVSTK
VAGSKMPSIIGPIESEVGSQSQIGYVVANDDQMPRNSRPTQGIVSTRSYTQLVALRATAVAIFKPRVEYANIPRNYIY
RFERDVVPPAWVATLNTQFNYGRPEWINLDTFGLSEVDGRAVVSEYVGNINSRR"
          },
          annot {
            {
              data ftable {
                {
                  data prot {
                    name {
                      "Putative capsid protein"
                    }
                  },
                  partial TRUE,
                  location int {
                    from 0,
                    to 413,
                    id gi 067065065076258451,
                    fuzz-from lim lt
                  }
                }
              }
            }
          }
        }
      },
      annot {
        {
          data ftable {
            {
              id local id 1,
              data cdregion {
                frame two,
                code {
                  id 1
                }
              },
              partial TRUE,
              product whole gi 067065065076258451,
              location int {
                from 0,
                to 1245,
                strand plus,
                id gi 0670650651120191,
                fuzz-from lim lt
              },
              xref {
                {
                  id local id 2
                },
                {
                  id local id 3
                }
              }
            }
          }
        }
      }
    }
  }
}