e.g., HRA000087; HRA000150
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HRA003533
   HRA003533.xlsx
Title:
WGBS
Release date:
2022-11-30
Description:
In this study, we performed WGS, WGBS, RNA sequencing, and small RNA sequencing on tumor tissues as well as matched adjacent non-neoplastic tissues from ESCC patients to discover potential molecular subgroups. We present a comprehensive molecular profiling of ESCC with a focus on identifying novel molecular subgroups and functionally altered signaling pathways that may drive tumorigenesis and serve as prognostic or therapeutic signatures.
Data Accessibility:   
Controlled access Request Data
BioProject:
PRJCA004501
Study type:
Disease Study
Disease name:
esophageal cancer
Data Access Committee

For each controlled access study, there is a corresponding Data Access Committee(DAC) to determine the access permissions. Access to actual data files is not managed by NGDC.


DAC NO.:
HDAC000119
DAC name:
ESCC
Contact person:
Liu Zhihua
Email:
liuzh@cicams.ac.cn
Description:
ESCC WGS study
Individuals & samples
Individual Accession
Individual Name
Gender
Sample Accession
Sample Name
Sample Description
Individual Accession
Individual Name
Gender
Sample Accession
Sample Name
Sample Description
HRI3125411BDESCC2-1maleHRS4925361BDESCC2-1Nadjacent non-neoplastic tissue
HRI3125411BDESCC2-1maleHRS4925371BDESCC2-1TESCC tissue
HRI3125421BDESCC2-2maleHRS4925381BDESCC2-2Nadjacent non-neoplastic tissue
HRI3125421BDESCC2-2maleHRS4925391BDESCC2-2TESCC tissue
HRI3125431BDESCC2-3maleHRS4925401BDESCC2-3Nadjacent non-neoplastic tissue
HRI3125431BDESCC2-3maleHRS4925411BDESCC2-3TESCC tissue
HRI3125441BDESCC2-4femaleHRS4925421BDESCC2-4Nadjacent non-neoplastic tissue
HRI3125441BDESCC2-4femaleHRS4925431BDESCC2-4TESCC tissue
HRI3125451BDESCC2-6femaleHRS4925441BDESCC2-6Nadjacent non-neoplastic tissue
HRI3125451BDESCC2-6femaleHRS4925451BDESCC2-6TESCC tissue
Showing 1 to 10 of 309 rows rows per page
Files
Request Data
Run accession
Files
Experiment
Experiment title
Platform
Sample
Run accession
Files
Experiment
Experiment title
Platform
Sample
HRR844041HRR844041_f1.fastq.gz (30.16 GB)HRX599023WGBS of S1Illumina NovaSeq 6000HRS492536 (SAMC2470346)
HRR844041HRR844041_r2.fastq.gz (34.41 GB)HRX599023WGBS of S1Illumina NovaSeq 6000HRS492536 (SAMC2470346)
HRR844042HRR844042_f1.fastq.gz (58.72 GB)HRX599024WGBS of S2Illumina NovaSeq 6000HRS492537 (SAMC2470351)
HRR844042HRR844042_r2.fastq.gz (66.68 GB)HRX599024WGBS of S2Illumina NovaSeq 6000HRS492537 (SAMC2470351)
HRR844043HRR844043_f1.fastq.gz (30.26 GB)HRX599025WGBS of S3Illumina NovaSeq 6000HRS492538 (SAMC2470355)
HRR844043HRR844043_r2.fastq.gz (34.31 GB)HRX599025WGBS of S3Illumina NovaSeq 6000HRS492538 (SAMC2470355)
HRR844044HRR844044_f1.fastq.gz (66.39 GB)HRX599026WGBS of S4Illumina NovaSeq 6000HRS492539 (SAMC2470360)
HRR844044HRR844044_r2.fastq.gz (76.01 GB)HRX599026WGBS of S4Illumina NovaSeq 6000HRS492539 (SAMC2470360)
HRR844045HRR844045_f1.fastq.gz (31.68 GB)HRX599027WGBS of S5Illumina NovaSeq 6000HRS492540 (SAMC2470363)
HRR844045HRR844045_r2.fastq.gz (37.53 GB)HRX599027WGBS of S5Illumina NovaSeq 6000HRS492540 (SAMC2470363)
Showing 1 to 10 of 612 rows rows per page
Submitter:   Liu Zhihua / liuzh@cicams.ac.cn
Organization:   National Cancer Center/National Clinical Research Center for Cancer/Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College
Submission date:   2022-11-28
Requests:   8