e.g., HRA000087; HRA000150
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HRA008309
   HRA008309.xlsx
Title:
Low Pass Whole Genome Sequencing for Detecting Chromosome Instability in Breast Cancer
Release date:
2024-09-29
Description:
The aim of this project is to evaluate the role of chromosomal instability (CIN) in the preoperative prediction of sentinel lymph node (SLN) metastasis in breast cancer patients. By analyzing low-pass whole-genome sequencing (LP-WGS) data in depth, we plan to explore the correlation between CIN and SLN metastasis and develop a CIN-based predictive model to improve the accuracy of preoperative assessment of lymph node metastasis risk in breast cancer patients. This project not only helps to improve the level of personalized treatment for breast cancer patients but may also provide new research ideas and methods for predicting lymph node metastasis in other types of tumors. By reducing unnecessary invasive examinations, this project is expected to improve patients' quality of life and provide a scientific basis for the rational allocation of medical resources.
Data Accessibility:   
Controlled access Request Data
BioProject:
PRJCA029094
Study type:
Disease Study
Disease name:
female breast cancer
Data Access Committee

For each controlled access study, there is a corresponding Data Access Committee(DAC) to determine the access permissions. Access to actual data files is not managed by NGDC.


DAC NO.:
HDAC004567
DAC name:
DAC
Contact person:
Hao Hua
Email:
haohua410@tongji.edu.cn
Description:
DAC for project PRJCA029094
Individuals & samples
Individual Accession
Individual Name
Gender
Sample Accession
Sample Name
Sample Description
Individual Accession
Individual Name
Gender
Sample Accession
Sample Name
Sample Description
HRI1022405IN001femaleHRS1339370SN001Paraffin-embedded blocks of sentinel lymph node tissue from a patient with breast cancer
HRI1022406IN002femaleHRS1339371SN002Paraffin-embedded blocks of sentinel lymph node tissue from a patient with breast cancer
HRI1022407IN003femaleHRS1339372SN003Paraffin-embedded blocks of sentinel lymph node tissue from a patient with breast cancer
HRI1022408IN004femaleHRS1339373SN004Paraffin-embedded blocks of sentinel lymph node tissue from a patient with breast cancer
HRI1022409IN005femaleHRS1339374SN005Paraffin-embedded blocks of sentinel lymph node tissue from a patient with breast cancer
HRI1022410IN006femaleHRS1339375SN006Paraffin-embedded blocks of sentinel lymph node tissue from a patient with breast cancer
HRI1022411IN007femaleHRS1339376SN007Paraffin-embedded blocks of sentinel lymph node tissue from a patient with breast cancer
HRI1022412IN008femaleHRS1339377SN008Paraffin-embedded blocks of sentinel lymph node tissue from a patient with breast cancer
HRI1022413IN009femaleHRS1339378SN009Paraffin-embedded blocks of sentinel lymph node tissue from a patient with breast cancer
HRI1022414IN010femaleHRS1339379SN010Paraffin-embedded blocks of sentinel lymph node tissue from a patient with breast cancer
Showing 1 to 10 of 29 rows rows per page
Files
Request Data
Run accession
Files
Experiment
Experiment title
Platform
Sample
Run accession
Files
Experiment
Experiment title
Platform
Sample
HRR1877033HRR1877033_f1.fq.gz (2.45 GB)HRX1519925E-WGS-SN001Illumina HiSeq X TenHRS1339370 (SAMC4075999)
HRR1877033HRR1877033_r2.fq.gz (2.49 GB)HRX1519925E-WGS-SN001Illumina HiSeq X TenHRS1339370 (SAMC4075999)
HRR1877034HRR1877034_f1.fq.gz (1.83 GB)HRX1519926E-WGS-SN002Illumina HiSeq X TenHRS1339371 (SAMC4076000)
HRR1877034HRR1877034_r2.fq.gz (1.91 GB)HRX1519926E-WGS-SN002Illumina HiSeq X TenHRS1339371 (SAMC4076000)
HRR1877035HRR1877035_f1.fq.gz (1.41 GB)HRX1519927E-WGS-SN003Illumina HiSeq X TenHRS1339372 (SAMC4076001)
HRR1877035HRR1877035_r2.fq.gz (1.50 GB)HRX1519927E-WGS-SN003Illumina HiSeq X TenHRS1339372 (SAMC4076001)
HRR1877036HRR1877036_f1.fq.gz (2.33 GB)HRX1519928E-WGS-SN004Illumina HiSeq X TenHRS1339373 (SAMC4076002)
HRR1877036HRR1877036_r2.fq.gz (2.47 GB)HRX1519928E-WGS-SN004Illumina HiSeq X TenHRS1339373 (SAMC4076002)
HRR1877037HRR1877037_f1.fq.gz (2.28 GB)HRX1519929E-WGS-SN005Illumina HiSeq X TenHRS1339374 (SAMC4076003)
HRR1877037HRR1877037_r2.fq.gz (2.40 GB)HRX1519929E-WGS-SN005Illumina HiSeq X TenHRS1339374 (SAMC4076003)
Showing 1 to 10 of 58 rows rows per page
Submitter:   Hao Hua / haohua410@tongji.edu.cn
Organization:   Yangpu Hospital, School of Medicine, Tongji University
Submission date:   2024-08-13
Requests:   1