- Scientific Name
- Glycine soja
- Common Names
- wild soybean; Glycine max subsp. soja
- Bioproject
- PRJCA002030
- Biosample
- SAMC130388
- Accession No.
- GWHACDZ00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR106546, CRR106545, CRR106544, CRR106543, CRR106539, more
- GVM variations of the species
- -
- Submitter Organization
- PCCE, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
- Contact
- Yucheng Liu, ychliu@genetics.ac.cn
- Sequence author(s)
- Yucheng Liu, Huilong Du, Haikuan Zhang, Yanting Shen, Hua Peng, Shulin Liu, Guo-An Zhou, Miao Shi, Pengcheng Li, Xuehui Huang, Yan Li, Min Zhang, Zheng Wang, Baoge Zhu, Bin Han, Chengzhi Liang, Zhixi Tian
- Released Date
- 2020-04-08
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- CANU v1.7.1
HERA 2018-1
Juicer v1.5
3D-DNA version 180114
BioNano Solve v3.0.1 - Sequencing & coverage
- PacBio 116.8
Bionanol 331.9
Hi-C 177.0
Illumina Novaseq 6000 62.1 - Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Yucheng Liu, et al. Pan-Genome of Wild and Cultivated Soybeans. Cell. 2020.
Statistics of Genome Assembly
| Genome size (bp) | 1,006,955,568 |
| GC content | 34.97% |
| Chromosomes sequence No. | 20 |
| Genome sequence No. | 118 |
| Maximum genome sequence length (bp) | 60,857,055 |
| Minimum genome sequence length (bp) | 13,786 |
| Average genome sequence length (bp) | 8,533,522 |
| Genome sequence N50 (bp) | 51,876,710 |
| Genome sequence N90 (bp) | 41,922,064 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 82,012 | 82,012 |
| Others | 499 | 499 |
| Total | 82,511 | 82,511 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 3,733 | 3,733 |
| chr10 | 4,486 | 4,486 |
| chr11 | 6,581 | 6,581 |
| chr12 | 3,677 | 3,677 |
| chr13 | 3,023 | 3,023 |
| chr14 | 3,496 | 3,496 |
| chr15 | 4,027 | 4,027 |
| chr16 | 3,050 | 3,050 |
| chr17 | 3,946 | 3,946 |
| chr18 | 4,360 | 4,360 |
| chr19 | 3,816 | 3,816 |
| chr2 | 4,528 | 4,528 |
| chr20 | 3,667 | 3,667 |
| chr3 | 3,815 | 3,815 |
| chr4 | 3,822 | 3,822 |
| chr5 | 3,742 | 3,742 |
| chr6 | 4,683 | 4,683 |
| chr7 | 4,061 | 4,061 |
| chr8 | 5,379 | 5,379 |
| chr9 | 4,120 | 4,120 |
| Others | 499 | 499 |
| Total | 82,511 | 82,511 |