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  • Glycine soja
  • SoyW03_asm
    • Scientific Name
    Glycine soja
    Common Names
    wild soybean; Glycine max subsp. soja
    Bioproject
    PRJCA002030
    Biosample
    SAMC130389
    Accession No.
    GWHACEA00000000
    GWH reannotation accession
    -
    GSA raw reads
    CRR106557, CRR106568, CRR106556, CRR106567, CRR106555,
    GVM variations of the species
    -
    Submitter Organization
    PCCE, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
    Contact
    Yucheng Liu, ychliu@genetics.ac.cn
    Sequence author(s)
    Yucheng Liu, Huilong Du, Haikuan Zhang, Yanting Shen, Hua Peng, Shulin Liu, Guo-An Zhou, Miao Shi, Pengcheng Li, Xuehui Huang, Yan Li, Min Zhang, Zheng Wang, Baoge Zhu, Bin Han, Chengzhi Liang, Zhixi Tian
    Released Date
    2020-04-08
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Assembly method
    CANU v1.7.1
    HERA 2018-1
    Juicer v1.5
    3D-DNA version 180114
    BioNano Solve v3.0.1
    Sequencing & coverage
    PacBio 120.7
    Bionanol 243.2
    Hi-C 119.6
    Illumina Novaseq 6000 67.6
    Download
    DNA GFF RNA CDS Protein
    Publication(s)
    Yucheng Liu, et al. Pan-Genome of Wild and Cultivated Soybeans. Cell. 2020.
    Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
    GWHACEA00000000 - SoyW03_asm Draft genome in chromosome level 2020-04-08 DNA GFF RNA CDS Protein

    Statistics of Genome Assembly

    Genome size (bp) 1,014,546,956
    GC content 35.12%
    Chromosomes sequence No. 20
    Genome sequence No. 74
    Maximum genome sequence length (bp) 61,359,240
    Minimum genome sequence length (bp) 10,000
    Average genome sequence length (bp) 13,710,094
    Genome sequence N50 (bp) 52,300,887
    Genome sequence N90 (bp) 42,505,845
    Annotation of Whole Genome Assembly
    Protein Total
    Chromosome 83,500 83,500
    Others 533 533
    Total 84,033 84,033
    Annotation Details
    ChrID Protein Total
    chr1 3,845 3,845
    chr10 4,613 4,613
    chr11 4,200 4,200
    chr12 3,730 3,730
    chr13 5,362 5,362
    chr14 3,511 3,511
    chr15 4,198 4,198
    chr16 3,074 3,074
    chr17 4,051 4,051
    chr18 4,481 4,481
    chr19 3,952 3,952
    chr2 4,799 4,799
    chr20 3,226 3,226
    chr3 3,948 3,948
    chr4 4,120 4,120
    chr5 3,821 3,821
    chr6 4,781 4,781
    chr7 4,343 4,343
    chr8 5,244 5,244
    chr9 4,201 4,201
    Others 533 533
    Total 84,033 84,033