- Scientific Name
- Camellia sinensis var. sinensis
- Common Names
- -
- Bioproject
- PRJCA001158
- Biosample
- SAMC050981
- Accession No.
- GWHACFB00000000
- GWH reannotation accession
- -
- GSA raw reads
-
CRR115610,
CRR115601,
CRR115600,
CRR115603,
CRR115602,
more
CRR115605, CRR115604, CRR115607, CRR115606, CRR115609,
CRR115608, CRR115511, CRR115510, CRR115513, CRR115512,
CRR115515, CRR115514, CRR115517, CRR115516, CRR115519,
CRR115518, CRR115500, CRR115502, CRR115501, CRR115504,
CRR115503, CRR115506, CRR115505, CRR115508, CRR115507,
CRR115509, CRR115540, CRR115410, CRR115531, CRR115530,
CRR115412, CRR115533, CRR115411, CRR115532, CRR115414,
CRR115535, CRR115413, CRR115534, CRR115416, CRR115537,
CRR115415, CRR115536, CRR115418, CRR115539, CRR115417,
CRR115538, CRR115419, CRR115520, CRR115401, CRR115522,
CRR115400, CRR115521, CRR115403, CRR115524, CRR115402,
CRR115523, CRR115405, CRR115526, CRR115404, CRR115525,
CRR115407, CRR115528, CRR115406, CRR115527, CRR115409,
CRR115408, CRR115529, CRR115560, CRR115441, CRR115562,
CRR115440, CRR115561, CRR115432, CRR115553, CRR115431,
CRR115552, CRR115434, CRR115555, CRR115433, CRR115554,
CRR115436, CRR115557, CRR115435, CRR115556, CRR115438,
CRR115559, CRR115437, CRR115558, CRR115439, CRR115430,
CRR115551, CRR115550, CRR115421, CRR115542, CRR115420,
CRR115541, CRR115423, CRR115544, CRR115422, CRR115543,
CRR115425, CRR115546, CRR115424, CRR115545, CRR115427,
CRR115548, CRR115426, CRR115547, CRR115429, CRR115428,
CRR115549, CRR115580, CRR115461, CRR115582, CRR115460,
CRR115581, CRR115463, CRR115584, CRR115462, CRR115583,
CRR115454, CRR115575, CRR115453, CRR115574, CRR115456,
CRR115577, CRR115455, CRR115576, CRR115458, CRR115579,
CRR115457, CRR115578, CRR115459, CRR115450, CRR115571,
CRR115570, CRR115452, CRR115573, CRR115451, CRR115572,
CRR115443, CRR115564, CRR115442, CRR115563, CRR115445,
CRR115566, CRR115444, CRR115565, CRR115447, CRR115568,
CRR115446, CRR115567, CRR115449, CRR115448, CRR115569,
CRR115481, CRR115480, CRR115483, CRR115482, CRR115485,
CRR115484, CRR115476, CRR115597, CRR115475, CRR115596,
CRR115478, CRR115599, CRR115477, CRR115598, CRR115479,
CRR115470, CRR115591, CRR115590, CRR115472, CRR115593,
CRR115471, CRR115592, CRR115474, CRR115595, CRR115473,
CRR115594, CRR115465, CRR115586, CRR115464, CRR115585,
CRR115467, CRR115588, CRR115466, CRR115587, CRR115469,
CRR115468, CRR115589, CRR115498, CRR115497, CRR115499,
CRR115490, CRR115492, CRR115491, CRR115494, CRR115493,
CRR115496, CRR115495, CRR115487, CRR115486, CRR115489,
CRR115488, CRR115399, CRR115398, CRR115391, CRR115390,
CRR115393, CRR115392, CRR115395, CRR115394, CRR115397,
CRR115396, CRR115389, hide - GVM variations of the species
- -
- Submitter Organization
- ruanjue_group, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences
- Contact
- alun li, lialun@caas.cn
- Sequence author(s)
- alun li
- Released Date
- 2020-08-04
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- wtdbg 1.2.8
- Sequencing & coverage
- PacBio 60.0
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Xinchao Wang, et al. Population sequencing enhances understanding of tea plant evolution. Nature Communications. 2020, 11(1): 4447.
Statistics of Genome Assembly
| Genome size (bp) | 3,260,671,035 |
| GC content | 38.68% |
| Genome sequence No. | 30,544 |
| Maximum genome sequence length (bp) | 212,836,541 |
| Minimum genome sequence length (bp) | 2,118 |
| Average genome sequence length (bp) | 106,753 |
| Genome sequence N50 (bp) | 143,847,529 |
| Genome sequence N90 (bp) | 35,688 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 33,556 | 33,556 |