Scientific Name
human oral metagenome
Common Names
human oral microbiome
Bioproject
PRJCA003731
Biosample
SAMC259464
Accession No.
GWHAPMC00000000
GWH reannotation accession
-
GSA raw reads
-
GVM variations of the species
-
Submitter Organization
The Institute of Metagenomics Research, BGI
Contact
Jie Zhu, zhujie@genomics.cn
Sequence author(s)
Jie Zhu
Released Date
2020-11-30
Assembly Level
Draft genome in contig level
Genome Representation
Full Genome
Assembly method
metaSPAdes v.3.13.0
MetaBAT2 v2.12.1
Sequencing & coverage
BGISEQ-500 30
Download
DNA
Publication(s)
Jie Zhu, et al. Over 50,000 Metagenomically Assembled Draft Genomes for the Human Oral Microbiome Reveal New Taxa. Genomics, Proteomics & Bioinformatics. 2021.
Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
GWHAPMC00000000 - uSGB_254 Draft genome in contig level 2020-11-30 DNA GFF RNA Protein

Statistics of Genome Assembly

Genome size (bp) 685,375
GC content 35.76%
Contig sequence No. 25
Maximum contig sequence length (bp) 152,003
Minimum contig sequence length (bp) 2,098
Average contig sequence length (bp) 27,415
Contig N50 (bp) 38,291
Contig N90 (bp) 12,099