- Scientific Name
- human oral metagenome
- Common Names
- human oral microbiome
- Bioproject
- PRJCA003731
- Biosample
- SAMC259497
- Accession No.
- GWHAPMK00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- The Institute of Metagenomics Research, BGI
- Contact
- Jie Zhu(zhujie@genomics.cn)
- Sequence author(s)
- Jie Zhu
- Released Date
- 2020-11-30
- Assembly Level
- Draft genome in contig level
- Genome Representation
- Full Genome
- Assembly method
- metaSPAdes v.3.13.0
MetaBAT2 v2.12.1 - Sequencing & coverage
- BGISEQ-500 30
- Download
- DNA
- Reannotation Download
- -
- Publication(s)
- Jie Zhu, et al. Over 50,000 Metagenomically Assembled Draft Genomes for the Human Oral Microbiome Reveal New Taxa. Genomics, Proteomics & Bioinformatics. 2021.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHAPMK00000000 | - | uSGB_2162 | Draft genome in contig level | 2020-11-30 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 471,954 |
| GC content | 40.06% |
| Contig sequence No. | 111 |
| Maximum contig sequence length (bp) | 17,457 |
| Minimum contig sequence length (bp) | 1,574 |
| Average contig sequence length (bp) | 4,252 |
| Contig N50 (bp) | 5,460 |
| Contig N90 (bp) | 2,225 |