- Scientific Name
- Anas platyrhynchos
- Common Names
- duck, mallard duck, mallard ducks; mallard; Anas boschas, Anas domesticus, Anas platyrhynchos f. domestica
- Bioproject
- PRJCA061132
- Biosample
- SAMC7358908
- Accession No.
- GWHIGVC00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- 8,342,394 (SNP), 1,509,678 (Indel)
- Submitter Organization
- Sichuan University of Arts and Science
- Contact
- Ruisi Hu, grishu0707@gmail.com
- Sequence author(s)
- Ruisi Hu
- Released Date
- 2026-04-07
- Assembly Level
- Complete genome
- Genome Representation
- Full Genome
- Assembly method
- Hifiasm ONT 0.25.0-r726
- Sequencing & coverage
- Oxford Nanopore Technologies 70
PacBio HiFi 30
Hi-C 100
DNBSEQ-T7 60 - Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 1,263,956,587 |
| GC content | 42.82% |
| Chromosomes sequence No. | 42 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | ncRNA | Others | Total | |
|---|---|---|---|---|---|---|
| Chromosome | 19,363 | 415 | 385 | 187 | 293 | 20,643 |
| Total | 19,363 | 415 | 385 | 187 | 293 | 20,643 |
Annotation Details
| ChrID | Protein | tRNA | rRNA | ncRNA | Others | Total |
|---|---|---|---|---|---|---|
| chr1 | 2,557 | 56 | 2 | 22 | 38 | 2,675 |
| chr10 | 406 | 1 | 0 | 7 | 5 | 419 |
| chr11 | 392 | 2 | 0 | 7 | 9 | 410 |
| chr12 | 458 | 34 | 1 | 8 | 8 | 509 |
| chr13 | 423 | 15 | 0 | 2 | 4 | 444 |
| chr14 | 259 | 0 | 0 | 0 | 0 | 259 |
| chr15 | 394 | 0 | 0 | 6 | 1 | 401 |
| chr16 | 474 | 5 | 0 | 3 | 1 | 483 |
| chr17 | 403 | 4 | 0 | 5 | 7 | 419 |
| chr18 | 398 | 6 | 0 | 3 | 7 | 414 |
| chr19 | 343 | 12 | 0 | 3 | 5 | 363 |
| chr2 | 1,647 | 73 | 1 | 19 | 30 | 1,770 |
| chr20 | 348 | 3 | 0 | 6 | 13 | 370 |
| chr21 | 211 | 2 | 128 | 0 | 1 | 342 |
| chr22 | 202 | 1 | 0 | 4 | 3 | 210 |
| chr23 | 274 | 0 | 0 | 2 | 1 | 277 |
| chr24 | 266 | 0 | 0 | 3 | 12 | 281 |
| chr25 | 302 | 4 | 0 | 4 | 1 | 311 |
| chr26 | 235 | 2 | 0 | 1 | 1 | 239 |
| chr27 | 169 | 1 | 0 | 0 | 1 | 171 |
| chr28 | 403 | 23 | 0 | 2 | 2 | 430 |
| chr29 | 198 | 0 | 0 | 0 | 0 | 198 |
| chr3 | 1,438 | 36 | 1 | 16 | 26 | 1,517 |
| chr30 | 234 | 4 | 0 | 3 | 4 | 245 |
| chr31 | 319 | 4 | 0 | 3 | 3 | 329 |
| chr32 | 379 | 2 | 0 | 3 | 2 | 386 |
| chr33 | 169 | 29 | 3 | 0 | 0 | 201 |
| chr34 | 108 | 1 | 0 | 2 | 2 | 113 |
| chr35 | 134 | 0 | 0 | 4 | 2 | 140 |
| chr36 | 36 | 1 | 24 | 0 | 0 | 61 |
| chr37 | 93 | 10 | 0 | 1 | 3 | 107 |
| chr38 | 6 | 0 | 0 | 0 | 0 | 6 |
| chr39 | 12 | 0 | 0 | 0 | 0 | 12 |
| chr4 | 1,266 | 8 | 0 | 12 | 24 | 1,310 |
| chr40 | 54 | 0 | 0 | 1 | 1 | 56 |
| chr5 | 1,110 | 14 | 0 | 3 | 14 | 1,141 |
| chr6 | 591 | 44 | 0 | 6 | 7 | 648 |
| chr7 | 652 | 1 | 0 | 4 | 7 | 664 |
| chr8 | 587 | 3 | 1 | 8 | 23 | 622 |
| chr9 | 511 | 3 | 223 | 2 | 9 | 748 |
| chrW | 36 | 1 | 1 | 1 | 1 | 40 |
| chrZ | 866 | 10 | 0 | 11 | 15 | 902 |
| Total | 19,363 | 415 | 385 | 187 | 293 | 20,643 |