- Scientific Name
- Anas platyrhynchos
- Common Names
- duck, mallard duck, mallard ducks; mallard; Anas boschas, Anas domesticus, Anas platyrhynchos f. domestica
- Bioproject
- PRJCA062894
- Biosample
- SAMC7568411
- Accession No.
- GWHJELV00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- 8,342,394 (SNP), 1,509,678 (Indel)
- Submitter Organization
- College of Medicine, Sichuan University of Arts and Science
- Contact
- Ruisi Hu, grishu0707@gmail.com
- Sequence author(s)
- Ruisi Hu
- Released Date
- 2026-04-24
- Assembly Level
- Complete genome
- Genome Representation
- Full Genome
- Assembly method
- Hifiasm ONT 0.25.0-r726
- Sequencing & coverage
- Oxford Nanopore Technologies 70
PacBio HiFi 30
Hi-C 100
DNBSEQ-T7 60 - Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 1,263,956,587 |
| GC content | 42.82% |
| Chromosomes sequence No. | 42 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | ncRNA | Total | |
|---|---|---|---|---|---|
| Chromosome | 19,363 | 415 | 277 | 2,334 | 22,389 |
| Total | 19,363 | 415 | 277 | 2,334 | 22,389 |
Annotation Details
| ChrID | Protein | tRNA | rRNA | ncRNA | Total |
|---|---|---|---|---|---|
| chr1 | 2,557 | 56 | 1 | 267 | 2,881 |
| chr10 | 392 | 2 | 0 | 53 | 447 |
| chr11 | 458 | 34 | 0 | 57 | 549 |
| chr12 | 423 | 15 | 0 | 22 | 460 |
| chr13 | 406 | 1 | 0 | 48 | 455 |
| chr14 | 394 | 0 | 0 | 30 | 424 |
| chr15 | 474 | 5 | 0 | 44 | 523 |
| chr16 | 398 | 6 | 0 | 48 | 452 |
| chr17 | 169 | 29 | 1 | 50 | 249 |
| chr18 | 319 | 4 | 0 | 26 | 349 |
| chr19 | 343 | 12 | 0 | 26 | 381 |
| chr2 | 1,647 | 73 | 1 | 201 | 1,922 |
| chr20 | 348 | 3 | 0 | 50 | 401 |
| chr21 | 403 | 4 | 0 | 55 | 462 |
| chr22 | 274 | 0 | 0 | 18 | 292 |
| chr23 | 235 | 2 | 0 | 19 | 256 |
| chr24 | 266 | 0 | 0 | 33 | 299 |
| chr25 | 202 | 1 | 0 | 16 | 219 |
| chr26 | 379 | 2 | 0 | 36 | 417 |
| chr27 | 302 | 4 | 0 | 45 | 351 |
| chr28 | 403 | 23 | 0 | 25 | 451 |
| chr29 | 6 | 0 | 0 | 4 | 10 |
| chr3 | 1,438 | 36 | 0 | 163 | 1,637 |
| chr30 | 198 | 0 | 0 | 56 | 254 |
| chr31 | 211 | 2 | 42 | 37 | 292 |
| chr32 | 169 | 1 | 0 | 38 | 208 |
| chr33 | 259 | 0 | 0 | 45 | 304 |
| chr34 | 234 | 4 | 0 | 25 | 263 |
| chr35 | 134 | 0 | 0 | 32 | 166 |
| chr36 | 93 | 10 | 0 | 23 | 126 |
| chr37 | 108 | 1 | 0 | 30 | 139 |
| chr38 | 36 | 1 | 8 | 13 | 58 |
| chr39 | 12 | 0 | 0 | 2 | 14 |
| chr4 | 1,266 | 8 | 0 | 156 | 1,430 |
| chr40 | 54 | 0 | 0 | 24 | 78 |
| chr5 | 1,110 | 14 | 0 | 110 | 1,234 |
| chr6 | 652 | 1 | 0 | 63 | 716 |
| chr7 | 591 | 44 | 0 | 74 | 709 |
| chr8 | 587 | 3 | 1 | 81 | 672 |
| chr9 | 511 | 3 | 223 | 43 | 780 |
| chrW | 36 | 1 | 0 | 39 | 76 |
| chrZ | 866 | 10 | 0 | 107 | 983 |
| Total | 19,363 | 415 | 277 | 2,334 | 22,389 |