- Scientific Name
- Camellia sinensis
- Common Names
- black tea; Thea sinensis
- Bioproject
- PRJCA003382
- Biosample
- SAMC233898
- Accession No.
- GWHAZTZ00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR180601, CRR180600, CRR180599
- GVM variations of the species
- -
- Submitter Organization
- College of Horticulture, Fujian Agriculture and Forestry University
- Contact
- xingtan zhang, zhangxingtan@caas.cn
- Sequence author(s)
- jiaxin yu, pengjie wang
- Released Date
- 2021-03-25
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- hifiASM 0.13-r308
ALLHiC 0.98 - Sequencing & coverage
- PacBio 18.3
Illumina HiSeq 2500 109.0 - Download
-
DNA
GFF
RNA
Protein
- Publication(s)
- Pengjie Wang, et al. Genetic basis of high aroma and stress tolerance in the oolong tea cultivargenome. Horticulture Research. 2021, 8.
Statistics of Genome Assembly
| Genome size (bp) | 2,948,971,410 |
| GC content | 38.63% |
| Genome sequence No. | 913 |
| Maximum genome sequence length (bp) | 247,215,687 |
| Minimum genome sequence length (bp) | 1,000 |
| Average genome sequence length (bp) | 3,229,980 |
| Genome sequence N50 (bp) | 213,274,022 |
| Genome sequence N90 (bp) | 156,641,268 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 43,779 | 43,779 |