- Scientific Name
- Camellia sinensis
- Common Names
- black tea; Thea sinensis
- Bioproject
- PRJCA003382
- Biosample
- SAMC233898
- Accession No.
- GWHBAUV00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR180601, CRR180600, CRR180599
- GVM variations of the species
- -
- Submitter Organization
- Center for Genomics and Biotechnology, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Key Laboratory of Genetics, Fujian Agriculture and Forestry University
- Contact
- xingtan zhang, zhangxingtan@caas.cn
- Sequence author(s)
- jiaxin yu
- Released Date
- 2021-09-28
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- hifiasm 0.13-r308
whatsHap 0.18
HapCUT2 1.3.2
RaGOO 1.1 - Sequencing & coverage
- PacBio 18.3
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Pengjie Wang, et al. Genetic basis of high aroma and stress tolerance in the oolong tea cultivargenome. Horticulture Research. 2021, 8.
Statistics of Genome Assembly
| Genome size (bp) | 5,879,548,707 |
| GC content | 38.48% |
| Genome sequence No. | 43 |
| Maximum genome sequence length (bp) | 241,717,261 |
| Minimum genome sequence length (bp) | 1,449 |
| Average genome sequence length (bp) | 136,733,691 |
| Genome sequence N50 (bp) | 213,387,167 |
| Genome sequence N90 (bp) | 157,893,458 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 88,514 | 88,514 |