- Scientific Name
- Nypa fruticans
- Common Names
- nypa palm; nipa palm;
- Bioproject
- PRJCA004930
- Biosample
- SAMC353239
- Accession No.
- GWHBCKC00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- School of Life Sciences, Sun Yat-sen University
- Contact
- Xiao Feng, fengx25@mail2.sysu.edu.cn
- Sequence author(s)
- Ziwen He
- Released Date
- 2022-04-27
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- wtdbg2 2.5
3D-DNA 180922 - Sequencing & coverage
- PacBio 137
Hi-C 121
short‑insert 106 - Download
- DNA
- Publication(s)
- Ziwen He, et al. Evolution of coastal forests based on a full set of mangrove genomes. Nature Ecology & Evolution. 2022.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBCKC00000000 | - | Nfruticans_genome_v1 | Draft genome in chromosome level | 2022-04-27 |
DNA
|
| GWHBCKC00000000.1 | - | Nfruticans_genome_v2 | Draft genome in chromosome level | 2023-12-30 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 489,478,216 |
| GC content | 38.35% |
| Genome sequence No. | 182 |
| Maximum genome sequence length (bp) | 43,079,684 |
| Minimum genome sequence length (bp) | 15,065 |
| Average genome sequence length (bp) | 2,689,441 |
| Genome sequence N50 (bp) | 27,901,653 |
| Genome sequence N90 (bp) | 22,305,524 |