- Scientific Name
- Nypa fruticans
- Common Names
- nypa palm; nipa palm;
- Bioproject
- PRJCA022416
- Biosample
- SAMC3279992
- Accession No.
- GWHBCKC00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- School of Life Sciences, Sun Yat-sen University
- Contact
- Weihong Wu, wuwh25@mail2.sysu.edu.cn
- Sequence author(s)
- Ziwen He
- Released Date
- 2023-12-30
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- wtdbg2 2.5
3D-DNA 180922 - Sequencing & coverage
- PacBio 137.0
Hi-C 121.0
short‑insert 106.0 - Download
- DNA
- Publication(s)
- -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBCKC00000000 | - | Nfruticans_genome_v1 | Draft genome in chromosome level | 2022-04-27 |
DNA
|
| GWHBCKC00000000.1 | - | Nfruticans_genome_v2 | Draft genome in chromosome level | 2023-12-30 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 489,382,825 |
| GC content | 38.35% |
| Genome sequence No. | 2,280 |
| Maximum genome sequence length (bp) | 38,192,863 |
| Minimum genome sequence length (bp) | 282 |
| Average genome sequence length (bp) | 214,642 |
| Genome sequence N50 (bp) | 25,774,892 |
| Genome sequence N90 (bp) | 468,833 |