- Scientific Name
- Oryza sativa Indica Group
- Common Names
- Indian rice, Indica rice; long-grained rice; Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa subsp. indica
- Bioproject
- PRJCA005541
- Biosample
- SAMC394165
- Accession No.
- GWHBCKX00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- School of Life Sciences, Nanjing University
- Contact
- Shan Lu, shanlu@nju.edu.cn
- Sequence author(s)
- Kui Li
- Released Date
- 2021-06-21
- Assembly Level
- Complete genome
- Genome Representation
- Full Genome
- Assembly method
- hifiasm 0.14-r312
- Sequencing & coverage
- PacBio 102.34
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 397,706,730 |
| GC content | 43.66% |
| Chromosomes sequence No. | 12 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 35,760 | 35,760 |
| Total | 35,760 | 35,760 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 4,854 | 4,854 |
| chr10 | 2,021 | 2,021 |
| chr11 | 2,392 | 2,392 |
| chr12 | 2,109 | 2,109 |
| chr2 | 3,797 | 3,797 |
| chr3 | 4,228 | 4,228 |
| chr4 | 3,175 | 3,175 |
| chr5 | 2,908 | 2,908 |
| chr6 | 2,912 | 2,912 |
| chr7 | 2,830 | 2,830 |
| chr8 | 2,454 | 2,454 |
| chr9 | 2,080 | 2,080 |
| Total | 35,760 | 35,760 |