- Scientific Name
- Rubus corchorifolius
- Common Names
- -
- Bioproject
- PRJCA005868
- Biosample
- SAMC433360
- Accession No.
- GWHBDNY00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Department of Biotechnology, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences
- Contact
- Yinqing Yang, 82101209705@caas.cn
- Sequence author(s)
- yinqing Yang
- Released Date
- 2021-07-19
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- NextDenovo v2.0-beta.1
- Sequencing & coverage
- Oxford Nanopore 180.0
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Yinqing Yang, et al. Genome Assembly and Population Resequencing Reveal the Geographical Divergence of Shanmei (Rubus corchorifolius). Genomics, Proteomics & Bioinformatics. 2022.
Statistics of Genome Assembly
| Genome size (bp) | 215,685,748 |
| GC content | 36.10% |
| Genome sequence No. | 10 |
| Maximum genome sequence length (bp) | 36,678,181 |
| Minimum genome sequence length (bp) | 56,575 |
| Average genome sequence length (bp) | 21,568,575 |
| Genome sequence N50 (bp) | 29,519,794 |
| Genome sequence N90 (bp) | 26,961,307 |
Annotation of Whole Genome Assembly
| Protein | Others | Total | |
|---|---|---|---|
| Total | 26,696 | 26,696 | 53,392 |