- Scientific Name
- Epimedium pubescens
- Common Names
- -
- Bioproject
- PRJCA006303
- Biosample
- SAMC448786
- Accession No.
- GWHBECS00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Molecular plant, Institute of Botany, Chinese Academy of Sciences
- Contact
- Hui Zhang, zhhui12@ibcas.ac.cn
- Sequence author(s)
- Hui Zhang
- Released Date
- 2021-09-18
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Smartdenovo 1.0
- Sequencing & coverage
- Nanopore 271.32
- Download
-
DNA
GFF
RNA
Protein
- Publication(s)
- Yu Yao, et al. A Novel 3-O-rhamnoside: 2''-O-xylosyltransferase Responsible for TerminalModification of Prenylflavonol Glycosides in Epimedium pubescens Maxim. International Journal of Molecular Sciences. 2022, 23(24).
Statistics of Genome Assembly
| Genome size (bp) | 3,392,132,203 |
| GC content | 37.57% |
| Chromosomes sequence No. | 6 |
| Organellas sequence No. | 2 |
Annotation of Whole Genome Assembly
| Protein | Others | Total | |
|---|---|---|---|
| Chromosome | 42,813 | 14 | 42,827 |
| Total | 42,813 | 14 | 42,827 |
Annotation Details
| ChrID | Protein | Others | Total |
|---|---|---|---|
| chr1 | 7,576 | 3 | 7,579 |
| chr2 | 7,606 | 5 | 7,611 |
| chr3 | 7,445 | 1 | 7,446 |
| chr4 | 7,475 | 2 | 7,477 |
| chr5 | 6,739 | 0 | 6,739 |
| chr6 | 5,972 | 3 | 5,975 |
| Total | 42,813 | 14 | 42,827 |