- Scientific Name
- Panax quinquefolius
- Common Names
- Panax quinquefolium
- Bioproject
- PRJCA006678
- Biosample
- SAMC461555
- Accession No.
- GWHBEIR00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- School of Life Sciences, Fudan University
- Contact
- Zhenhui Wang(wzhjlau@163.com), Xinfeng Wang(1483672992@qq.com)
- Sequence author(s)
- Zhenhui Wang
- Released Date
- 2022-03-05
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Smartdenovo Jun-2020 2020
- Sequencing & coverage
- Oxford Nanopore 70.0
- Download
- DNA
- Reannotation Download
- -
- Publication(s)
- Zhen-Hui Wang, et al. Reshuffling of the ancestral core-eudicot genome shaped chromatin topology and epigenetic modification in Panax. Nature Communications. 2022, 13(1): 1902 .
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBEIR00000000 | - | Panax quinquefolium genome | Draft genome in chromosome level | 2022-03-05 |
DNA
|
| GWHBEIR00000000.1 | - | P. quinquefolium | Draft genome in chromosome level | 2022-09-21 |
DNA
GFF
RNA
CDS
Protein
|
Statistics of Genome Assembly
| Genome size (bp) | 3,565,324,690 |
| GC content | 34.11% |
| Chromosomes sequence No. | 24 |
| Genome sequence No. | 821 |
| Maximum genome sequence length (bp) | 179,034,630 |
| Minimum genome sequence length (bp) | 45,107 |
| Average genome sequence length (bp) | 4,342,661 |
| Genome sequence N50 (bp) | 138,853,252 |
| Genome sequence N90 (bp) | 87,840,169 |