- Scientific Name
- Panax quinquefolius
- Common Names
- Panax quinquefolium
- Bioproject
- PRJCA006678
- Biosample
- SAMC461555
- Accession No.
- GWHBEIR00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- School of Life Sciences, Sun Yat-sen University
- Contact
- Zhenhui wang(wzhjlau@163.com)
- Sequence author(s)
- xinfeng wang
- Released Date
- 2022-09-21
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Smartdenovo version1
- Sequencing & coverage
- Nanopore 70.24
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Zhen-Hui Wang, et al. Reshuffling of the ancestral core-eudicot genome shaped chromatin topology and epigenetic modification in Panax. Nature Communications. 2022, 13(1): 1902 .
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBEIR00000000 | - | Panax quinquefolium genome | Draft genome in chromosome level | 2022-03-05 |
DNA
|
| GWHBEIR00000000.1 | - | P. quinquefolium | Draft genome in chromosome level | 2022-09-21 |
DNA
GFF
RNA
CDS
Protein
|
Statistics of Genome Assembly
| Genome size (bp) | 4,156,718,154 |
| GC content | 34.11% |
| Genome sequence No. | 1,406 |
| Maximum genome sequence length (bp) | 179,034,630 |
| Minimum genome sequence length (bp) | 43,221 |
| Average genome sequence length (bp) | 2,956,414 |
| Genome sequence N50 (bp) | 136,271,129 |
| Genome sequence N90 (bp) | 980,352 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 64,247 | 64,247 |