- Scientific Name
- Carica papaya
- Common Names
- mamon; papaya;
- Bioproject
- PRJCA006722
- Biosample
- SAMC462410
- Accession No.
- GWHBFSD00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Agricultural, Fujian Agriculture and Forestry University
- Contact
- jingjing Yue, jingjingyue11@126.com
- Sequence author(s)
- jingjing Yue
- Released Date
- 2021-10-29
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Necat necat_20200803
- Sequencing & coverage
- Oxford Nanopore MinION Ultra- Long 56.0
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Jingjing Yue, et al. SunUp and Sunset genomes revealed impact of particle bombardment mediated transformation and domestication history in papaya. Nature Genetics. 2022, 54(5): 715-724.
Statistics of Genome Assembly
| Genome size (bp) | 350,347,606 |
| GC content | 36.03% |
| Genome sequence No. | 68 |
| Maximum genome sequence length (bp) | 44,523,806 |
| Minimum genome sequence length (bp) | 4,230 |
| Average genome sequence length (bp) | 5,152,171 |
| Genome sequence N50 (bp) | 36,860,848 |
| Genome sequence N90 (bp) | 30,310,850 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 24,647 | 24,647 |