- Scientific Name
- Lentinula edodes
- Common Names
- shiitake mushroom; Agaricus edodes, Lentinus edodes
- Bioproject
- PRJCA007678
- Biosample
- SAMC540330
- Accession No.
- GWHBGWX00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR357962
- GVM variations of the species
- -
- Submitter Organization
- Institute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences
- Contact
- Qi Gao, gaoqi@ipepbaafs.cn
- Sequence author(s)
- Qi Gao
- Released Date
- 2021-12-29
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- HiCanu version 2.1
- Sequencing & coverage
- PacBio 2224.52
- Download
-
DNA
GFF
RNA
Protein
- Publication(s)
- Qi Gao, et al. Haplotype-Resolved Genome Analyses Reveal Genetically Distinct Nuclei within aCommercial Cultivar of Lentinula edodes. Journal of Fungi. 2022, 8(2).
Statistics of Genome Assembly
| Genome size (bp) | 50,834,139 |
| GC content | 46.01% |
| Genome sequence No. | 116 |
| Maximum genome sequence length (bp) | 6,127,555 |
| Minimum genome sequence length (bp) | 15,395 |
| Average genome sequence length (bp) | 438,225 |
| Genome sequence N50 (bp) | 5,320,140 |
| Genome sequence N90 (bp) | 2,496,968 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 14,188 | 14,188 |