- Scientific Name
- Populus euphratica
- Common Names
- Euphrates poplar; Populus diversifolia
- Bioproject
- PRJCA006811
- Biosample
- SAMC467232
- Accession No.
- GWHBHNV00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR330922, CRR330923
- GVM variations of the species
- -
- Submitter Organization
- College of Life Sciences, Tarim University
- Contact
- Zhijun Li, lizhijun0202@126.com
- Sequence author(s)
- Zhijun Li, Shanhe Zhang
- Released Date
- 2022-10-06
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- FALCON v1.0
- Sequencing & coverage
- Illumina Nova Seq 6000 100.33
PacBio Sequel II 90.11 - Download
- DNA GFF RNA Protein
- Publication(s)
- Shanhe Zhang, et al. Chromosome-scale assemblies of the male and female Populus euphratica genomes reveal the molecular basis of sex determination and sexual dimorphism. Communications Biology. 2022, 5(1): 1186.
Statistics of Genome Assembly
| Genome size (bp) | 511,252,577 |
| GC content | 32.29% |
| Genome sequence No. | 101 |
| Maximum genome sequence length (bp) | 60,098,320 |
| Minimum genome sequence length (bp) | 10,000 |
| Average genome sequence length (bp) | 5,061,907 |
| Genome sequence N50 (bp) | 23,893,804 |
| Genome sequence N90 (bp) | 20,200,829 |
Annotation of Whole Genome Assembly
| Protein | Others | Total | |
|---|---|---|---|
| Total | 36,041 | 2 | 36,043 |