- Scientific Name
- Populus euphratica
- Common Names
- Euphrates poplar; Populus diversifolia
- Bioproject
- PRJCA006811
- Biosample
- SAMC467233
- Accession No.
- GWHBHOO00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR330931
- GVM variations of the species
- -
- Submitter Organization
- College of Life Sciences, Tarim University
- Contact
- Zhijun Li(lizhijun0202@126.com)
- Sequence author(s)
- Zhijun Li, Shanhe Zhang
- Released Date
- 2022-10-06
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- FALCON v1.0
- Sequencing & coverage
- Illumina NovaSeq 6000 110.14
PacBio Sequel II 97.77 - Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Shanhe Zhang, et al. Chromosome-scale assemblies of the male and female Populus euphratica genomes reveal the molecular basis of sex determination and sexual dimorphism. Communications Biology. 2022, 5(1): 1186.
Statistics of Genome Assembly
| Genome size (bp) | 527,144,509 |
| GC content | 32.26% |
| Genome sequence No. | 786 |
| Maximum genome sequence length (bp) | 63,969,725 |
| Minimum genome sequence length (bp) | 8,634 |
| Average genome sequence length (bp) | 670,667 |
| Genome sequence N50 (bp) | 24,784,848 |
| Genome sequence N90 (bp) | 15,374,722 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 36,727 | 36,727 |