- Scientific Name
- Klebsiella pneumoniae
- Common Names
- Bacillus pneumoniae, Bacterium pneumoniae crouposae, Hyalococcus pneumoniae, 'Klebsiella aerogenes' (Kruse) Taylor et al. 1956, Klebsiella pneumoniae aerogenes
- Bioproject
- PRJCA009406
- Biosample
- SAMC742957
- Accession No.
- GWHBITW00000000
- GWH reannotation accession
- GWHRA_BITW00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- school of global health, Shanghai Jiaotong University School of Medicine
- Contact
- YongZhang Zhu, yzhzhu@sjtu.edu.cn
- Sequence author(s)
- Mingquan Guo
- Released Date
- 2023-05-01
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Partial Genome ( Nuclear )
- Assembly method
- SPAdes 3.15.4
- Sequencing & coverage
- Illumina HiSeq 4000 200.0
- Download
- DNA Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein
- Publication(s)
- Ping Lin, et al. Dysbiosis of the Gut Microbiota and Kynurenine (Kyn) Pathway Activity asPotential Biomarkers in Patients with Major Depressive Disorder. Nutrients. 2023, 15(7).
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBITW00000000 | GWHRA_BITW00000000.1 | PLA3 | Draft genome in scaffold level | 2023-05-01 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 5,618,270 |
| GC content | 57.19% |
| Scaffold sequence No. | 54 |
| Maximum scaffold sequence length (bp) | 706,727 |
| Minimum scaffold sequence length (bp) | 533 |
| Average scaffold sequence length (bp) | 104,042 |
| Scaffold N50 (bp) | 289,484 |
| Scaffold N90 (bp) | 82,813 |
Statistics of Genome Assembly
| Genome size (bp) | 5,618,270 |
| GC content | 57.19% |
| Scaffold sequence No. | 54 |
| Maximum scaffold sequence length (bp) | 706,727 |
| Minimum scaffold sequence length (bp) | 533 |
| Average scaffold sequence length (bp) | 104,042 |
| Scaffold N50 (bp) | 289,484 |
| Scaffold N90 (bp) | 82,813 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | ncRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 5,220 | 72 | 10 | 6 | 142 | 77 | 5,527 |