- Scientific Name
- Malus domestica
- Common Names
- apple tree, cultivated apple; apple; Malus communis, Malus pumila auct., Malus pumila var. domestica, Malus sylvestris var. domestica, Malus x domestica, Pyrus malus, Pyrus malus var. domestica
- Bioproject
- PRJCA007001
- Biosample
- SAMC474534
- Accession No.
- GWHBJED00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR336915
- GVM variations of the species
- 80,507,572 (SNP), 11,854,944 (Indel)
- Submitter Organization
- horticulture, Northwest A&F University
- Contact
- dong zhang(afant@nwafu.edu.cn)
- Sequence author(s)
- yu liu
- Released Date
- 2022-09-03
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- NECAT 20200803
- Sequencing & coverage
- nanopore 30.0
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Yu Liu, et al. Multi-omics analyses reveal MdMYB10 hypermethylation being responsible for a bud sport of apple fruit color. Horticulture Research. 2022.
Statistics of Genome Assembly
| Genome size (bp) | 649,577,944 |
| GC content | 38.06% |
| Genome sequence No. | 1,698 |
| Maximum genome sequence length (bp) | 53,620,527 |
| Minimum genome sequence length (bp) | 202 |
| Average genome sequence length (bp) | 382,555 |
| Genome sequence N50 (bp) | 35,775,650 |
| Genome sequence N90 (bp) | 30,835,710 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 45,955 | 45,955 |