- Scientific Name
- Malus domestica
- Common Names
- apple tree, cultivated apple; apple; Malus communis, Malus pumila auct., Malus pumila var. domestica, Malus sylvestris var. domestica, Malus x domestica, Pyrus malus, Pyrus malus var. domestica
- Bioproject
- PRJCA007680
- Biosample
- SAMC539083
- Accession No.
- GWHBOTC00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- 80,507,572 (SNP), 11,854,944 (Indel)
- Submitter Organization
- Horticultural College, Shenyang Agricultural University
- Contact
- Gongxun Xu(gongxunxu1993@163.com)
- Sequence author(s)
- Sijun Qin, Gongxun Xu, Jiali He, Lijie Li, Huaiyu Ma, Deguo Lyu
- Released Date
- 2022-09-27
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Falcon falcon-kit=1.0
- Sequencing & coverage
- PacBio 113.0
- Download
- DNA
- Reannotation Download
- -
- Publication(s)
- Sijun Qin, et al. A chromosome-scale genome assembly of Malus domestica, a multi-stress resistant apple variety. Genomics. 2023, 115(3): 110627.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBOTC00000000 | - | Hanfu | Draft genome in chromosome level | 2022-09-27 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 631,734,079 |
| GC content | 38.00% |
| Genome sequence No. | 140 |
| Maximum genome sequence length (bp) | 51,004,601 |
| Minimum genome sequence length (bp) | 1,475 |
| Average genome sequence length (bp) | 4,512,386 |
| Genome sequence N50 (bp) | 36,183,222 |
| Genome sequence N90 (bp) | 30,585,459 |