- Scientific Name
- Datura stramonium
- Common Names
- common thornapple; jimsonweed;
- Bioproject
- PRJCA012583
- Biosample
- SAMC961963
- Accession No.
- GWHBOZL00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- School of Life Sciences, Southwest University
- Contact
- Zhihua Liao(zhliao@swu.edu.cn)
- Sequence author(s)
- Fangyuan Zhang, Fei Qiu, Junlan Zeng, Zhichao Xu, Yueli Tang, Tengfei Zhao, Yuqin Gou, Fei Su, Shiyi Wang, Xiuli Sun, Zheyong Xue, Weixing Wang, Chunxian Yang, Lingjiang Zeng, Xiaozhong Lan, Min Chen, Junhui Zhou, Zhihua Liao
- Released Date
- 2022-10-31
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Partial Genome ( Nuclear )
- Assembly method
- ABySS v0.3.0
- Sequencing & coverage
- Illumina HiSeq 2000 460.0
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Fangyuan Zhang, et al. Revealing evolution of tropane alkaloid biosynthesis by analyzing two genomes in the Solanaceae family. Nature Communications. 2023, 14.
Statistics of Genome Assembly
| Genome size (bp) | 1,844,867,945 |
| GC content | 39.15% |
| Genome sequence No. | 1,227 |
| Maximum genome sequence length (bp) | 236,938,339 |
| Minimum genome sequence length (bp) | 5,000 |
| Average genome sequence length (bp) | 1,503,560 |
| Genome sequence N50 (bp) | 163,681,163 |
| Genome sequence N90 (bp) | 100,158,972 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 32,037 | 32,037 |