- Scientific Name
- Malus domestica
- Common Names
- apple tree, cultivated apple; apple; Malus communis, Malus pumila auct., Malus pumila var. domestica, Malus sylvestris var. domestica, Malus x domestica, Pyrus malus, Pyrus malus var. domestica
- Bioproject
- PRJCA015452
- Biosample
- SAMC1150989
- Accession No.
- GWHCBEK00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- 80,507,572 (SNP), 11,854,944 (Indel)
- Submitter Organization
- Horticulture, China Agricultural University
- Contact
- Haochen Sun(fei_chen980615@163.com)
- Sequence author(s)
- Wei Li, Haochen Sun, Shiyao Wang, Zijun Wang
- Released Date
- 2025-02-10
- Assembly Level
- Draft genome in contig level
- Genome Representation
- Full Genome
- Assembly method
- hifiasm v0.15_r334
- Sequencing & coverage
- PacBio 40.74
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Wei Li, et al. Pan-genome analysis reveals the evolution and diversity of Malus. Nature Genetics. 2025, 57(5): 1274-1286.
Statistics of Genome Assembly
| Genome size (bp) | 664,780,981 |
| GC content | 38.24% |
| Contig sequence No. | 287 |
| Maximum contig sequence length (bp) | 54,732,202 |
| Minimum contig sequence length (bp) | 9,898 |
| Average contig sequence length (bp) | 2,316,310 |
| Contig N50 (bp) | 31,238,064 |
| Contig N90 (bp) | 8,613,222 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 49,005 | 49,005 |