- Scientific Name
- Glycine max
- Common Names
- soybeans; soybean; Phaseolus max
- Bioproject
- PRJCA017373
- Biosample
- SAMC1273266
- Accession No.
- GWHCBIZ00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR793981
- GVM variations of the species
- 40,350,378 (SNP), 12,368,700 (Indel)
- Submitter Organization
- Agricultural, Northeast Agricultural University
- Contact
- Song Jin, jinsong1999163@163.com
- Sequence author(s)
- Lin Tian
- Released Date
- 2023-06-02
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Hifiasm(V0.16) 2023.06.01
- Sequencing & coverage
- Hi-C 99.63
HiFi 99.97 - Download
-
DNA
GFF
RNA
Protein
- Publication(s) -
Statistics of Genome Assembly
| Genome size (bp) | 1,025,636,851 |
| GC content | 35.10% |
| Chromosomes sequence No. | 20 |
| Genome sequence No. | 353 |
| Maximum genome sequence length (bp) | 61,627,423 |
| Minimum genome sequence length (bp) | 8,152 |
| Average genome sequence length (bp) | 2,905,487 |
| Genome sequence N50 (bp) | 51,397,241 |
| Genome sequence N90 (bp) | 43,666,259 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 54,685 | 54,685 |
| Others | 493 | 493 |
| Total | 55,178 | 55,178 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 2,493 | 2,493 |
| chr10 | 2,960 | 2,960 |
| chr11 | 2,688 | 2,688 |
| chr12 | 2,439 | 2,439 |
| chr13 | 3,566 | 3,566 |
| chr14 | 2,208 | 2,208 |
| chr15 | 2,691 | 2,691 |
| chr16 | 2,079 | 2,079 |
| chr17 | 2,575 | 2,575 |
| chr18 | 2,884 | 2,884 |
| chr19 | 2,619 | 2,619 |
| chr2 | 3,087 | 3,087 |
| chr20 | 2,503 | 2,503 |
| chr3 | 2,610 | 2,610 |
| chr4 | 2,519 | 2,519 |
| chr5 | 2,493 | 2,493 |
| chr6 | 3,207 | 3,207 |
| chr7 | 2,696 | 2,696 |
| chr8 | 3,598 | 3,598 |
| chr9 | 2,770 | 2,770 |
| Others | 493 | 493 |
| Total | 55,178 | 55,178 |