- Scientific Name
- Zea mays
- Common Names
- maize; Zea mays var. japonica
- Bioproject
- PRJCA000828
- Biosample
- SAMC036455
- Accession No.
- GWHAACS00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- 73,140,072 (SNP), 16,129,758 (Indel)
- Submitter Organization
- maize group, Huazhong Agricultural University
- Contact
- Ning Yang, yangningyingji@126.com
- Sequence author(s)
- Ning Yang
- Released Date
- 2019-06-13
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- FALCON v0.3.0
- Sequencing & coverage
- PacBio 86.5
- Download
- DNA GFF RNA Protein
- Publication(s)
- -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHAACS00000000 | - | the genome of SK | Draft genome in scaffold level | 2019-04-03 |
DNA
GFF
RNA
Protein
|
| GWHAACS00000000.1 | - | SK genome | Draft genome in scaffold level | 2019-06-13 |
DNA
GFF
RNA
Protein
|
Statistics of Genome Assembly
| Genome size (bp) | 2,161,392,594 |
| GC content | 46.75% |
| Chromosomes sequence No. | 10 |
| Genome sequence No. | 671 |
| Maximum genome sequence length (bp) | 301,303,159 |
| Minimum genome sequence length (bp) | 18,433 |
| Average genome sequence length (bp) | 3,221,151 |
| Genome sequence N50 (bp) | 223,671,546 |
| Genome sequence N90 (bp) | 164,686,309 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 95,031 | 95,031 |
| Others | 879 | 879 |
| Total | 95,910 | 95,910 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 14,628 | 14,628 |
| chr10 | 6,391 | 6,391 |
| chr2 | 11,289 | 11,289 |
| chr3 | 10,331 | 10,331 |
| chr4 | 9,886 | 9,886 |
| chr5 | 11,050 | 11,050 |
| chr6 | 7,967 | 7,967 |
| chr7 | 7,729 | 7,729 |
| chr8 | 8,355 | 8,355 |
| chr9 | 7,405 | 7,405 |
| Others | 879 | 879 |
| Total | 95,910 | 95,910 |